RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	KIF3C	O14782	793 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CBFA2T2	O43439	604 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	HDLBP	Q00341	1268 aa	Known RBP	13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	MDM2	Q00987	491 aa	Predicted RBP	13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PPP2R3A	Q06190	1150 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	SNRNP27	Q8WVK2	155 aa	Known RBP	13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	SMARCE1	Q969G3	411 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	KRT23	Q9C075	422 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	TFR2	Q9UP52	801 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063		V9GY48	417 aa	Predicted RBP	13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	LRP5	O75197	1615 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CD44	P16070	742 aa	Known RBP	13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	MCM6	Q14566	821 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PKN1	Q16512	942 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	TRIM74	Q86UV6	250 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	TRIM73	Q86UV7	250 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	IQCF2	Q8IXL9	164 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	NSUN4	Q96CB9	384 aa	Known RBP	13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RIOK1	Q9BRS2	568 aa	Known RBP	13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PARD6B	Q9BYG5	372 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	MUC3B	Q9H195	1237 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	POLL	Q9UGP5	575 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	IVNS1ABP	Q9Y6Y0	642 aa		13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CIC	Q96RK0	1608 aa	Predicted RBP	13	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ERICH2	A1L162	156 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CUTA	O60888	179 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	LDHB	P07195	334 aa	Known RBP	12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	TCF3	P15923	654 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	XBP1	P17861	261 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	OAS2	P29728	719 aa	Known RBP	12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	NOP2	P46087	812 aa	Known RBP	12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	HNRNPH2	P55795	449 aa	Known RBP	12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	SEC23A	Q15436	765 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ZNF174	Q15697	407 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	DOK7	Q18PE1	504 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ZNF804A	Q7Z570	1209 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RPS6KC1	Q96S38	1066 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	USP17L12	C9JPN9	530 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	USP17L21	D6R901	530 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RHOXF2B	P0C7M4	288 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RBL2	Q08999	1139 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RASGRP2	Q7LDG7	609 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	TRIM22	Q8IYM9	498 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RHOXF2	Q9BQY4	288 aa		12.99	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PHACTR2	O75167	634 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	SAFB	Q15424	915 aa	Known RBP eCLIP	12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	SPECC1L	Q69YQ0	1117 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RAD9B	Q6WBX8	426 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	AKT1S1	Q96B36	256 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	POM121	Q96HA1	1249 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CNNM2	Q9H8M5	875 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ARHGAP6	O43182	974 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	TBC1D8	O95759	1140 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CHRNA5	P30532	468 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ZNF394	Q53GI3	561 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	SWT1	Q5T5J6	900 aa	Known RBP	12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ARGLU1	Q9NWB6	273 aa	Predicted RBP	12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	FAM53C	Q9NYF3	392 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	LEMD3	Q9Y2U8	911 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PNPLA7	Q6ZV29	1317 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PPEF1	O14829	653 aa	Predicted RBP	12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ZSCAN12	O43309	604 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	BBOX1	O75936	387 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PTPRE	P23469	700 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	GTF2I	P78347	998 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	INF2	Q27J81	1249 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CRY2	Q49AN0	593 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PLIN2	Q99541	437 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	MKS1	Q9NXB0	559 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	MCM9	Q9NXL9	1143 aa		12.98	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	BAZ2A	Q9UIF9	1905 aa	Known RBP	12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	UBR3	Q6ZT12	1888 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PHLPP2	Q6ZVD8	1323 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CCDC66	A2RUB6	948 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	DEXI	O95424	95 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	GNAT2	P19087	354 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RASA3	Q14644	834 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	SART3	Q15020	963 aa	Known RBP	12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ZNF569	Q5MCW4	686 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	MFSD14B	Q5SR56	506 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	TBC1D16	Q8TBP0	767 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	GDAP1L1	Q96MZ0	367 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	LZTS2	Q9BRK4	669 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	MXD3	Q9BW11	206 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	VPS16	Q9H269	839 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CD209	Q9NNX6	404 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	SCN7A	Q01118	1682 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	STK36	Q9NRP7	1315 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RNF225	M0QZC1	329 aa	Predicted RBP	12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ACTN4	O43707	911 aa	Known RBP	12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CASP14	P31944	242 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	PEX19	P40855	299 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	USP5	P45974	858 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	CTR9	Q6PD62	1173 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	IGSF22	Q8N9C0	903 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	RASGRP4	Q8TDF6	673 aa		12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	12.97	□□□□□ -0.33
CDK5RAP3-231	ENST00000584063	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.97	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms