RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 COG5Q9UP83 839 aa15.24■□□□□ 0.03
SS18-219ENST00000581570 SOWAHBA6NEL2 793 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 CA3P07451 260 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 SMPD1P17405 629 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 ATP5JP18859 108 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 PSMC6P62333 389 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 TTLL4Q14679 1199 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 SBK1Q52WX2 424 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 TMEM31Q5JXX7 168 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 IQSEC1Q6DN90 963 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 ZSCAN25Q6NSZ9 544 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 HAUS7Q99871 368 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 ACAD9Q9H845 621 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 CERS4Q9HA82 394 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 MYH8P13535 1937 aa15.23■□□□□ 0.03
SS18-219ENST00000581570 TCF20Q9UGU0 1960 aaKnown RBP15.22■□□□□ 0.03
SS18-219ENST00000581570 MINDY4BA8MYZ0 360 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 TLL1O43897 1013 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 PFKMP08237 780 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 FDX1P10109 184 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 PTGS1P23219 599 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 MKL1Q969V6 931 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 A1CFQ9NQ94 594 aaKnown RBP15.22■□□□□ 0.03
SS18-219ENST00000581570 PDGFCQ9NRA1 345 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 COG6Q9Y2V7 657 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 Q9Y3F1 56 aa15.22■□□□□ 0.03
SS18-219ENST00000581570 BAZ2AQ9UIF9 1905 aaKnown RBP15.21■□□□□ 0.03
SS18-219ENST00000581570 IGKV6D-41A0A0C4DH26 115 aa15.21■□□□□ 0.03
SS18-219ENST00000581570 SUPT20HL2P0C7V6 817 aa15.21■□□□□ 0.03
SS18-219ENST00000581570 BMP3P12645 472 aa15.21■□□□□ 0.03
SS18-219ENST00000581570 SLFN13Q68D06 897 aa15.21■□□□□ 0.03
SS18-219ENST00000581570 KRT40Q6A162 431 aa15.21■□□□□ 0.03
SS18-219ENST00000581570 DEFB128Q7Z7B8 93 aa15.21■□□□□ 0.03
SS18-219ENST00000581570 ZNF444Q8N0Y2 327 aaPredicted RBP15.21■□□□□ 0.03
SS18-219ENST00000581570 STRBPQ96SI9 672 aaKnown RBP15.21■□□□□ 0.03
SS18-219ENST00000581570 ALDH8A1Q9H2A2 487 aaPredicted RBP15.21■□□□□ 0.03
SS18-219ENST00000581570 RNF146Q9NTX7 359 aa15.21■□□□□ 0.03
SS18-219ENST00000581570 CHD7Q9P2D1 2997 aa15.21■□□□□ 0.03
SS18-219ENST00000581570 EPOPA6NHQ4 379 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 GSG1L2A8MUP6 293 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 TMEM232C9JQI7 657 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 RAB11FIP3O75154 756 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 CYP2C9P11712 490 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 ACTN1P12814 892 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 TAPT1Q6NXT6 567 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 GIMAP6Q6P9H5 292 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 EEPD1Q7L9B9 569 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 RPAP2Q8IXW5 612 aaPredicted RBP15.2■□□□□ 0.02
SS18-219ENST00000581570 LRRC47Q8N1G4 583 aaKnown RBP15.2■□□□□ 0.02
SS18-219ENST00000581570 GMCL1P1Q8NEA9 526 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 ARNTL2Q8WYA1 636 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 HLA-CQ95604 372 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 CEP95Q96GE4 821 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 TRERF1Q96PN7 1200 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 TRMT13Q9NUP7 481 aaKnown RBP15.2■□□□□ 0.02
SS18-219ENST00000581570 MTMR4Q9NYA4 1195 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 ISY1Q9ULR0 285 aaKnown RBP15.2■□□□□ 0.02
SS18-219ENST00000581570 SYNPO2Q9UMS6 1093 aa15.2■□□□□ 0.02
SS18-219ENST00000581570 DDX49Q9Y6V7 483 aaKnown RBP15.2■□□□□ 0.02
SS18-219ENST00000581570 XIRP2A4UGR9 3374 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 HMMRO75330 724 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 PRDM1O75626 825 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 TTLL1O95922 423 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 TKFCQ3LXA3 575 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 TMEM63BQ5T3F8 832 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 KIAA1211Q6ZU35 1233 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 FBXO16Q8IX29 292 aaPredicted RBP15.19■□□□□ 0.02
SS18-219ENST00000581570 PHOSPHO2Q8TCD6 241 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 PANK1Q8TE04 598 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 CHURC1Q8WUH1 139 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 SLC9A7Q96T83 725 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 ZNF287Q9HBT7 754 aa15.19■□□□□ 0.02
SS18-219ENST00000581570 TNKSO95271 1327 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 KIF28PB7ZC32 967 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 CCER2I3L3R5 266 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 GPR37L1O60883 481 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 ALAS1P13196 640 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 STAT2P52630 851 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 TAP1Q03518 808 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 IKQ13123 557 aaPredicted RBP15.18■□□□□ 0.02
SS18-219ENST00000581570 FAM160B2Q86V87 743 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 STAG1Q8WVM7 1258 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 POLR3EQ9NVU0 708 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 GBF1Q92538 1859 aa15.18■□□□□ 0.02
SS18-219ENST00000581570 ZNF536O15090 1300 aa15.17■□□□□ 0.02
SS18-219ENST00000581570 NCOR1O75376 2440 aa15.17■□□□□ 0.02
SS18-219ENST00000581570 MCM3APO60318 1980 aa15.17■□□□□ 0.02
SS18-219ENST00000581570 ARHGEF15O94989 841 aa15.17■□□□□ 0.02
SS18-219ENST00000581570 RFC2P35250 354 aa15.17■□□□□ 0.02
SS18-219ENST00000581570 KHSRPQ92945 711 aaKnown RBP eCLIP15.17■□□□□ 0.023e-7■■■■□ 19.3
SS18-219ENST00000581570 VTA1Q9NP79 307 aa15.17■□□□□ 0.02
SS18-219ENST00000581570 CYP39A1Q9NYL5 469 aa15.17■□□□□ 0.02
SS18-219ENST00000581570 GREB1LQ9C091 1923 aaPredicted RBP15.16■□□□□ 0.02
SS18-219ENST00000581570 FAM86C2PA6NEL3 165 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 MYL3P08590 195 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 GRB10Q13322 594 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 DUSP28Q4G0W2 176 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 HERC6Q8IVU3 1022 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 SIRT2Q8IXJ6 389 aa15.16■□□□□ 0.02
SS18-219ENST00000581570 RETREG2Q8NC44 543 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms