RNA–Protein interactions for RNA: ENST00000579743.2

GGA3-208, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 4

Gene GGA3, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-208ENST00000579743 UPF3AQ9H1J1 476 aaKnown RBP16.13■□□□□ 0.17
GGA3-208ENST00000579743 OSBPL3Q9H4L5 887 aa16.13■□□□□ 0.17
GGA3-208ENST00000579743 MTMR10Q9NXD2 777 aa16.13■□□□□ 0.17
GGA3-208ENST00000579743 ZNF536O15090 1300 aa16.13■□□□□ 0.17
GGA3-208ENST00000579743 LOC102724159A0A0B4J2E5 919 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 TRIM43BA6NCK2 446 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 KIAA0355O15063 1070 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 HAND2P61296 217 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 NUCB1Q02818 461 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 FPGSQ05932 587 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 PWP2Q15269 919 aaKnown RBP16.12■□□□□ 0.17
GGA3-208ENST00000579743 SHHQ15465 462 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 IQSEC1Q6DN90 963 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 BTNL9Q6UXG8 535 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 Q7L0L9 218 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 TRIM43Q96BQ3 446 aaPredicted RBP16.12■□□□□ 0.17
GGA3-208ENST00000579743 GPCPD1Q9NPB8 672 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 CYP39A1Q9NYL5 469 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 CTNNA3Q9UI47 895 aa16.12■□□□□ 0.17
GGA3-208ENST00000579743 GPATCH4Q5T3I0 446 aaKnown RBP16.11■□□□□ 0.17
GGA3-208ENST00000579743 SH3RF1Q7Z6J0 888 aa16.11■□□□□ 0.17
GGA3-208ENST00000579743 PLEKHM2Q8IWE5 1019 aa16.11■□□□□ 0.17
GGA3-208ENST00000579743 RANBP17Q9H2T7 1088 aaKnown RBP16.11■□□□□ 0.17
GGA3-208ENST00000579743 VTA1Q9NP79 307 aa16.11■□□□□ 0.17
GGA3-208ENST00000579743 PTPDC1A2A3K4 754 aa16.1■□□□□ 0.17
GGA3-208ENST00000579743 SOWAHBA6NEL2 793 aa16.1■□□□□ 0.17
GGA3-208ENST00000579743 ARVCFO00192 962 aa16.1■□□□□ 0.17
GGA3-208ENST00000579743 SLC16A2P36021 539 aa16.1■□□□□ 0.17
GGA3-208ENST00000579743 SNAP25P60880 206 aa16.1■□□□□ 0.17
GGA3-208ENST00000579743 SMAD3P84022 425 aaKnown RBP16.1■□□□□ 0.17
GGA3-208ENST00000579743 CCSAPQ6IQ19 270 aaPredicted RBP16.1■□□□□ 0.17
GGA3-208ENST00000579743 CWC27Q6UX04 472 aaKnown RBP16.1■□□□□ 0.17
GGA3-208ENST00000579743 ZNF589Q86UQ0 364 aaPredicted RBP16.1■□□□□ 0.17
GGA3-208ENST00000579743 DGKHQ86XP1 1220 aa16.1■□□□□ 0.17
GGA3-208ENST00000579743 RNPC3Q96LT9 517 aaKnown RBP16.1■□□□□ 0.17
GGA3-208ENST00000579743 FGD4Q96M96 766 aa16.1■□□□□ 0.17
GGA3-208ENST00000579743 Q9Y3F1 56 aa16.1■□□□□ 0.17
GGA3-208ENST00000579743 FRMPD2Q68DX3 1309 aaPredicted RBP16.1■□□□□ 0.17
GGA3-208ENST00000579743 RANBP2P49792 3224 aaKnown RBP16.09■□□□□ 0.17
GGA3-208ENST00000579743 TIMP1P01033 207 aa16.09■□□□□ 0.17
GGA3-208ENST00000579743 PDHBP11177 359 aa16.09■□□□□ 0.17
GGA3-208ENST00000579743 FAAP100Q0VG06 881 aa16.09■□□□□ 0.17
GGA3-208ENST00000579743 PPIGQ13427 754 aaKnown RBP eCLIP16.09■□□□□ 0.177e-7■■■■□ 21.9
GGA3-208ENST00000579743 IMMTQ16891 758 aaKnown RBP16.09■□□□□ 0.17
GGA3-208ENST00000579743 BRDTQ58F21 947 aaPredicted RBP16.09■□□□□ 0.17
GGA3-208ENST00000579743 MUM1L1Q5H9M0 696 aa16.09■□□□□ 0.17
GGA3-208ENST00000579743 TTBK2Q6IQ55 1244 aa16.09■□□□□ 0.17
GGA3-208ENST00000579743 TLK2Q86UE8 772 aa16.09■□□□□ 0.17
GGA3-208ENST00000579743 TMEM199Q8N511 208 aa16.09■□□□□ 0.17
GGA3-208ENST00000579743 KAT14Q9H8E8 782 aa16.09■□□□□ 0.17
GGA3-208ENST00000579743 LTBP2Q14767 1821 aa16.08■□□□□ 0.17
GGA3-208ENST00000579743 MYADML2A6NDP7 307 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 DYNC1LI2O43237 492 aaPredicted RBP16.08■□□□□ 0.16
GGA3-208ENST00000579743 NKX3-2P78367 333 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 ZNF543Q08ER8 600 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 BAATQ14032 418 aaPredicted RBP16.08■□□□□ 0.16
GGA3-208ENST00000579743 FSCN1Q16658 493 aaKnown RBP16.08■□□□□ 0.16
GGA3-208ENST00000579743 C9orf50Q5SZB4 431 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 RNF207Q6ZRF8 634 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 KIAA1211Q6ZU35 1233 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 EXOC6Q8TAG9 804 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 KRT23Q9C075 422 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 MAF1Q9H063 256 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 CNNM2Q9H8M5 875 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 RAD50Q92878 1312 aa16.08■□□□□ 0.16
GGA3-208ENST00000579743 IGHDP01880 384 aa16.07■□□□□ 0.16
GGA3-208ENST00000579743 CALML3P27482 149 aa16.07■□□□□ 0.16
GGA3-208ENST00000579743 CDK7P50613 346 aa16.07■□□□□ 0.16
GGA3-208ENST00000579743 PDE4DQ08499 809 aa16.07■□□□□ 0.16
GGA3-208ENST00000579743 EEPD1Q7L9B9 569 aa16.07■□□□□ 0.16
GGA3-208ENST00000579743 DSCC1Q9BVC3 393 aa16.07■□□□□ 0.16
GGA3-208ENST00000579743 KATNBL1Q9H079 304 aa16.07■□□□□ 0.16
GGA3-208ENST00000579743 MTIF3Q9H2K0 278 aaKnown RBP16.07■□□□□ 0.16
GGA3-208ENST00000579743 GPHNQ9NQX3 736 aaPredicted RBP16.07■□□□□ 0.16
GGA3-208ENST00000579743 WDR19Q8NEZ3 1342 aa16.07■□□□□ 0.16
GGA3-208ENST00000579743 MCM3APO60318 1980 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.06■□□□□ 0.16
GGA3-208ENST00000579743 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.06■□□□□ 0.16
GGA3-208ENST00000579743 KDM4AO75164 1064 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 ALDH5A1P51649 535 aaPredicted RBP16.06■□□□□ 0.16
GGA3-208ENST00000579743 BEX3Q00994 111 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 MFSD5Q6N075 450 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 CXCL17Q6UXB2 119 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 TBC1D10CQ8IV04 446 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 FBXO16Q8IX29 292 aaPredicted RBP16.06■□□□□ 0.16
GGA3-208ENST00000579743 PNMA1Q8ND90 353 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 DNERQ8NFT8 737 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 MORC4Q8TE76 937 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 RUFY2Q8WXA3 655 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 FAM161BQ96MY7 647 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 UBAC1Q9BSL1 405 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 POLR3EQ9NVU0 708 aa16.06■□□□□ 0.16
GGA3-208ENST00000579743 GNEQ9Y223 722 aaKnown RBP16.06■□□□□ 0.16
GGA3-208ENST00000579743 TMEM265A0A087WTH1 108 aa16.05■□□□□ 0.16
GGA3-208ENST00000579743 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.05■□□□□ 0.16
GGA3-208ENST00000579743 NKRFO15226 690 aaKnown RBP eCLIP16.05■□□□□ 0.16
GGA3-208ENST00000579743 ADCY6O43306 1168 aa16.05■□□□□ 0.16
GGA3-208ENST00000579743 DHX16O60231 1041 aaKnown RBP16.05■□□□□ 0.16
GGA3-208ENST00000579743 SNHG28P0DPA3 235 aa16.05■□□□□ 0.16
GGA3-208ENST00000579743 SMPD1P17405 629 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms