RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 EXOSC10Q01780 885 aaKnown RBP11.82□□□□□ -0.52
SS18-210ENST00000578700 ICA1Q05084 483 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 KCTD2Q14681 263 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 SART3Q15020 963 aaKnown RBP11.82□□□□□ -0.52
SS18-210ENST00000578700 TJAP1Q5JTD0 557 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 STOX1Q6ZVD7 989 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 SIAH1Q8IUQ4 282 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 BRF1Q92994 677 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 TIFAQ96CG3 184 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 TCEANC2Q96MN5 208 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 TINF2Q9BSI4 451 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 VCPKMTQ9H867 229 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 STARD7Q9NQZ5 370 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 TOMM22Q9NS69 142 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 ATP8A2Q9NTI2 1148 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 FBXO28Q9NVF7 368 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 CHD7Q9P2D1 2997 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 TPCN1Q9ULQ1 816 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 NAP1L2Q9ULW6 460 aaPredicted RBP11.82□□□□□ -0.52
SS18-210ENST00000578700 TMX2Q9Y320 296 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 TAF6LQ9Y6J9 622 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 TRANK1O15050 2925 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 TMEM265A0A087WTH1 108 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 ERICH2A1L162 156 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 TNFRSF10AO00220 468 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 FOXP2O15409 715 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 PRKAB2O43741 272 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 PCP11498 1178 aaKnown RBP11.81□□□□□ -0.52
SS18-210ENST00000578700 AKR1A1P14550 325 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 STAT3P40763 770 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 FAAP100Q0VG06 881 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 TOB2Q14106 344 aaPredicted RBP11.81□□□□□ -0.52
SS18-210ENST00000578700 CCDC85BQ15834 202 aaPredicted RBP11.81□□□□□ -0.52
SS18-210ENST00000578700 ME3Q16798 604 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 AKNAD1Q5T1N1 836 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 FBXL16Q8N461 479 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 TNPO1Q92973 898 aaKnown RBP11.81□□□□□ -0.52
SS18-210ENST00000578700 GAS2L1Q99501 681 aaPredicted RBP11.81□□□□□ -0.52
SS18-210ENST00000578700 LARP6Q9BRS8 491 aaKnown RBP11.81□□□□□ -0.52
SS18-210ENST00000578700 SH2D4AQ9H788 454 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 DCP1AQ9NPI6 582 aaPredicted RBP11.81□□□□□ -0.52
SS18-210ENST00000578700 SWAP70Q9UH65 585 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 RAPGEFL1Q9UHV5 662 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 CNPY2Q9Y2B0 182 aa11.81□□□□□ -0.52
SS18-210ENST00000578700 CYP2D7A0A087X1C5 515 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 GRXCR1A8MXD5 290 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 MINDY4BA8MYZ0 360 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 SMIM22K7EJ46 135 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 WDR46O15213 610 aaKnown RBP11.8□□□□□ -0.52
SS18-210ENST00000578700 ZNF865P0CJ78 1059 aaPredicted RBP11.8□□□□□ -0.52
SS18-210ENST00000578700 EEF2P13639 858 aaKnown RBP11.8□□□□□ -0.52
SS18-210ENST00000578700 IGFBP4P22692 258 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 NT5C2P49902 561 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 ACLYP53396 1101 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 PPARAQ07869 468 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 STK3Q13188 491 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 KCNA10Q16322 511 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 ZNF792Q3KQV3 632 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 SYNE3Q6ZMZ3 975 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 RIOX2Q8IUF8 465 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 NUP133Q8WUM0 1156 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 DDX11Q96FC9 970 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 ZNF274Q96GC6 653 aaPredicted RBP11.8□□□□□ -0.52
SS18-210ENST00000578700 TMEM87BQ96K49 555 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.8□□□□□ -0.52
SS18-210ENST00000578700 LLPHQ9BRT6 129 aaKnown RBP11.8□□□□□ -0.52
SS18-210ENST00000578700 PRDM12Q9H4Q4 367 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 EPB41L4AQ9HCS5 686 aaPredicted RBP11.8□□□□□ -0.52
SS18-210ENST00000578700 ARPP21Q9UBL0 812 aaPredicted RBP11.8□□□□□ -0.52
SS18-210ENST00000578700 ZHX1Q9UKY1 873 aaPredicted RBP11.8□□□□□ -0.52
SS18-210ENST00000578700 ATP6V1DQ9Y5K8 247 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 MYH7P12883 1935 aa11.8□□□□□ -0.52
SS18-210ENST00000578700 TIMP1P01033 207 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 ACRP10323 421 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 MCM4P33991 863 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 PBX2P40425 430 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 CDK8P49336 464 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 IRX5P78411 483 aaPredicted RBP11.79□□□□□ -0.52
SS18-210ENST00000578700 FAM83BQ5T0W9 1011 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 CPLX2Q6PUV4 134 aaKnown RBP11.79□□□□□ -0.52
SS18-210ENST00000578700 NFXL1Q6ZNB6 911 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 MB21D2Q8IYB1 491 aaPredicted RBP11.79□□□□□ -0.52
SS18-210ENST00000578700 STK11IPQ8N1F8 1099 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 FAM184AQ8NB25 1140 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 STAG1Q8WVM7 1258 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 ESR2Q92731 530 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 GTF3C6Q969F1 213 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 NRBP1Q9UHY1 535 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 FAM184BQ9ULE4 1060 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 XIRP2A4UGR9 3374 aa11.79□□□□□ -0.52
SS18-210ENST00000578700 MYADML2A6NDP7 307 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 VWA5AO00534 786 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 PFKFB2O60825 505 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 ADAMTS4O75173 837 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 C6orf222P0C671 652 aaPredicted RBP11.78□□□□□ -0.52
SS18-210ENST00000578700 GJB2P29033 226 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 HMGN5P82970 282 aaKnown RBP11.78□□□□□ -0.52
SS18-210ENST00000578700 CTDSPL2Q05D32 466 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 APOBRQ0VD83 1088 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 RRP12Q5JTH9 1297 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms