RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 AKR1A1P14550 325 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 STAT3P40763 770 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 FAAP100Q0VG06 881 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 TOB2Q14106 344 aaPredicted RBP11.81□□□□□ -0.52
SS18-207ENST00000577636 CCDC85BQ15834 202 aaPredicted RBP11.81□□□□□ -0.52
SS18-207ENST00000577636 ME3Q16798 604 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 AKNAD1Q5T1N1 836 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 FBXL16Q8N461 479 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 TNPO1Q92973 898 aaKnown RBP11.81□□□□□ -0.52
SS18-207ENST00000577636 GAS2L1Q99501 681 aaPredicted RBP11.81□□□□□ -0.52
SS18-207ENST00000577636 LARP6Q9BRS8 491 aaKnown RBP11.81□□□□□ -0.52
SS18-207ENST00000577636 SH2D4AQ9H788 454 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 DCP1AQ9NPI6 582 aaPredicted RBP11.81□□□□□ -0.52
SS18-207ENST00000577636 SWAP70Q9UH65 585 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 RAPGEFL1Q9UHV5 662 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 CNPY2Q9Y2B0 182 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 RLFQ13129 1914 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 LTBP2Q14767 1821 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 FOCADQ5VW36 1801 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 CYP2D7A0A087X1C5 515 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 GRXCR1A8MXD5 290 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 MINDY4BA8MYZ0 360 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 SMIM22K7EJ46 135 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 WDR46O15213 610 aaKnown RBP11.8□□□□□ -0.52
SS18-207ENST00000577636 ZNF865P0CJ78 1059 aaPredicted RBP11.8□□□□□ -0.52
SS18-207ENST00000577636 EEF2P13639 858 aaKnown RBP11.8□□□□□ -0.52
SS18-207ENST00000577636 IGFBP4P22692 258 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 NT5C2P49902 561 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 ACLYP53396 1101 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 PPARAQ07869 468 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 STK3Q13188 491 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 KCNA10Q16322 511 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 ZNF792Q3KQV3 632 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 SYNE3Q6ZMZ3 975 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 RIOX2Q8IUF8 465 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 NUP133Q8WUM0 1156 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 DDX11Q96FC9 970 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 ZNF274Q96GC6 653 aaPredicted RBP11.8□□□□□ -0.52
SS18-207ENST00000577636 TMEM87BQ96K49 555 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.8□□□□□ -0.52
SS18-207ENST00000577636 LLPHQ9BRT6 129 aaKnown RBP11.8□□□□□ -0.52
SS18-207ENST00000577636 PRDM12Q9H4Q4 367 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 EPB41L4AQ9HCS5 686 aaPredicted RBP11.8□□□□□ -0.52
SS18-207ENST00000577636 ARPP21Q9UBL0 812 aaPredicted RBP11.8□□□□□ -0.52
SS18-207ENST00000577636 ZHX1Q9UKY1 873 aaPredicted RBP11.8□□□□□ -0.52
SS18-207ENST00000577636 ATP6V1DQ9Y5K8 247 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 MYH7P12883 1935 aa11.8□□□□□ -0.52
SS18-207ENST00000577636 TIMP1P01033 207 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 ACRP10323 421 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 MCM4P33991 863 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 PBX2P40425 430 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 CDK8P49336 464 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 IRX5P78411 483 aaPredicted RBP11.79□□□□□ -0.52
SS18-207ENST00000577636 FAM83BQ5T0W9 1011 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 CPLX2Q6PUV4 134 aaKnown RBP11.79□□□□□ -0.52
SS18-207ENST00000577636 NFXL1Q6ZNB6 911 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 MB21D2Q8IYB1 491 aaPredicted RBP11.79□□□□□ -0.52
SS18-207ENST00000577636 STK11IPQ8N1F8 1099 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 FAM184AQ8NB25 1140 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 STAG1Q8WVM7 1258 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 ESR2Q92731 530 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 GTF3C6Q969F1 213 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 NRBP1Q9UHY1 535 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 FAM184BQ9ULE4 1060 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 PRUNE2Q8WUY3 3088 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 SMCHD1A6NHR9 2005 aa11.79□□□□□ -0.52
SS18-207ENST00000577636 MYADML2A6NDP7 307 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 VWA5AO00534 786 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 PFKFB2O60825 505 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 ADAMTS4O75173 837 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 C6orf222P0C671 652 aaPredicted RBP11.78□□□□□ -0.52
SS18-207ENST00000577636 GJB2P29033 226 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 HMGN5P82970 282 aaKnown RBP11.78□□□□□ -0.52
SS18-207ENST00000577636 CTDSPL2Q05D32 466 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 APOBRQ0VD83 1088 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 RRP12Q5JTH9 1297 aaKnown RBP11.78□□□□□ -0.52
SS18-207ENST00000577636 TMEM240Q5SV17 173 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 ANKRD33Q7Z3H0 272 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 TBC1D10CQ8IV04 446 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 CPXCR1Q8N123 301 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 TMTC2Q8N394 836 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 NECAB1Q8N987 351 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 CCDC17Q96LX7 622 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 GLT1D1Q96MS3 346 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 TOX2Q96NM4 488 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 UBAC1Q9BSL1 405 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 TSEN34Q9BSV6 310 aaKnown RBP11.78□□□□□ -0.52
SS18-207ENST00000577636 MTA3Q9BTC8 594 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 LRRC2Q9BYS8 371 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 PBX4Q9BYU1 374 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 AGXT2Q9BYV1 514 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 PPP1R12CQ9BZL4 782 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 ZNF287Q9HBT7 754 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 GOPCQ9HD26 462 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 ANAPC4Q9UJX5 808 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 PPP1R9AQ9ULJ8 1098 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 DIS3Q9Y2L1 958 aaKnown RBP11.78□□□□□ -0.52
SS18-207ENST00000577636 CTDP1Q9Y5B0 961 aaPredicted RBP11.78□□□□□ -0.52
SS18-207ENST00000577636 SYNRGQ9UMZ2 1314 aa11.78□□□□□ -0.52
SS18-207ENST00000577636 KLF18A0A0U1RQI7 1052 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms