RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 INTUQ9ULD6 942 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 CLTCL1P53675 1640 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 CRB1P82279 1406 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 N4BP2Q86UW6 1770 aaPredicted RBP7.29□□□□□ -1.24
VPS53-219ENST00000576019 TRAV20A0A0B4J274 112 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 J3QW42 95 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 TNFRSF10AO00220 468 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 AGRPO00253 132 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 GPR39O43194 453 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 DNAJA2O60884 412 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 DNAJC8O75937 253 aaPredicted RBP7.29□□□□□ -1.24
VPS53-219ENST00000576019 HOXD8P13378 290 aaPredicted RBP7.29□□□□□ -1.24
VPS53-219ENST00000576019 NME1P15531 152 aaKnown RBP7.29□□□□□ -1.24
VPS53-219ENST00000576019 SELPP16109 830 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 TMPRSS15P98073 1019 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 SLC7A5Q01650 507 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 ZNF252P-AS1Q0IIN9 211 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 PCBP1Q15365 356 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS53-219ENST00000576019 ZNF423Q2M1K9 1284 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 GNPTABQ3T906 1256 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 WIPI1Q5MNZ9 446 aaPredicted RBP7.29□□□□□ -1.24
VPS53-219ENST00000576019 C6orf118Q5T5N4 469 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 RNF219Q5W0B1 726 aaPredicted RBP7.29□□□□□ -1.24
VPS53-219ENST00000576019 Q6ZNB5 142 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 HFE2Q6ZVN8 426 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 NLRC3Q7RTR2 1065 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 PASD1Q8IV76 773 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 SVIPQ8NHG7 77 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 COG1Q8WTW3 980 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 SLC7A3Q8WY07 619 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 BHMTQ93088 406 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 ATG4CQ96DT6 458 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 ZNF512BQ96KM6 892 aaPredicted RBP7.29□□□□□ -1.24
VPS53-219ENST00000576019 EMILIN2Q9BXX0 1053 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 MRPL4Q9BYD3 311 aaKnown RBP7.29□□□□□ -1.24
VPS53-219ENST00000576019 ZNF700Q9H0M5 742 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 FAM86C1Q9NVL1 165 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 GMIPQ9P107 970 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 REV1Q9UBZ9 1251 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 TRHDEQ9UKU6 1024 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 ANKRD30BQ9BXX2 1392 aa7.29□□□□□ -1.24
VPS53-219ENST00000576019 KDM6AO15550 1401 aaPredicted RBP7.28□□□□□ -1.24
VPS53-219ENST00000576019 E2F8A0AVK6 867 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 TTC24A2A3L6 582 aaPredicted RBP7.28□□□□□ -1.24
VPS53-219ENST00000576019 GOLGA6CA6NDK9 693 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 GOLGA6BA6NDN3 693 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 EFSO43281 561 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 UPP2O95045 317 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 GOLGA6DP0CG33 693 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 FAM157BP0CG42 384 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 BMP2P12643 396 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 MAP7Q14244 749 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 SETDB1Q15047 1291 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 NXNQ6DKJ4 435 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 NME8Q8N427 588 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 MAGEB6Q8N7X4 407 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 BSNDQ8WZ55 320 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 GAS2L1Q99501 681 aaPredicted RBP7.28□□□□□ -1.24
VPS53-219ENST00000576019 POP1Q99575 1024 aaKnown RBP7.28□□□□□ -1.24
VPS53-219ENST00000576019 AARSD1Q9BTE6 412 aaKnown RBP7.28□□□□□ -1.24
VPS53-219ENST00000576019 AVENQ9NQS1 362 aaPredicted RBP7.28□□□□□ -1.24
VPS53-219ENST00000576019 TOR4AQ9NXH8 423 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 GOLGA6AQ9NYA3 693 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 COL5A2P05997 1499 aaPredicted RBP7.28□□□□□ -1.24
VPS53-219ENST00000576019 USP54Q70EL1 1684 aa7.28□□□□□ -1.24
VPS53-219ENST00000576019 USP6P35125 1406 aa7.27□□□□□ -1.24
VPS53-219ENST00000576019 LCE2BO14633 110 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 ATXN7O15265 892 aaPredicted RBP7.27□□□□□ -1.25
VPS53-219ENST00000576019 KPNA6O60684 536 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 MAP3K6O95382 1288 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 NEK4P51957 841 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 SPEM2Q0P670 501 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 FOXD4Q12950 439 aaPredicted RBP7.27□□□□□ -1.25
VPS53-219ENST00000576019 SEPT7Q16181 437 aaKnown RBP7.27□□□□□ -1.25
VPS53-219ENST00000576019 GFOD2Q3B7J2 385 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 PDZD3Q86UT5 571 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 SPATS2Q86XZ4 545 aaKnown RBP7.27□□□□□ -1.25
VPS53-219ENST00000576019 SCYL1Q96KG9 808 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 GPR101Q96P66 508 aaPredicted RBP7.27□□□□□ -1.25
VPS53-219ENST00000576019 TRERF1Q96PN7 1200 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 SLC30A3Q99726 388 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 OSGEPQ9NPF4 335 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 KLHL3Q9UH77 587 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 DACH1Q9UI36 760 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 LAS1LQ9Y4W2 734 aaKnown RBP7.27□□□□□ -1.25
VPS53-219ENST00000576019 CEP162Q5TB80 1403 aa7.27□□□□□ -1.25
VPS53-219ENST00000576019 SLC22A31A6NKX4 558 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 VSTM5A8MXK1 200 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 GABRDO14764 452 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 NRDCO43847 1150 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 DGAT1O75907 488 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 F11P03951 625 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 NRLP54845 237 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 PPP2R2AP63151 447 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 TCIRG1Q13488 830 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 HSP90AA2PQ14568 343 aaPredicted RBP7.26□□□□□ -1.25
VPS53-219ENST00000576019 ZNF460Q14592 562 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 EFHC2Q5JST6 749 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 DGKHQ86XP1 1220 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms