RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.72■□□□□ 0.75
NUP88-210ENST00000574867 HEATR3Q7Z4Q2 680 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 WASF1Q92558 559 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 ERO1AQ96HE7 468 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 TRERF1Q96PN7 1200 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 CWC22Q9HCG8 908 aaKnown RBP19.72■□□□□ 0.75
NUP88-210ENST00000574867 MRPL11Q9Y3B7 192 aaKnown RBP19.72■□□□□ 0.75
NUP88-210ENST00000574867 RIPK3Q9Y572 518 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 PLXNB2O15031 1838 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 FCGRTP55899 365 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 PKN1Q16512 942 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 SMARCC2Q8TAQ2 1214 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 ZNF296Q8WUU4 475 aaPredicted RBP19.72■□□□□ 0.75
NUP88-210ENST00000574867 MAF1Q9H063 256 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 EFCC1Q9HA90 598 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 HOMER2Q9NSB8 354 aa19.72■□□□□ 0.75
NUP88-210ENST00000574867 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.72■□□□□ 0.75
NUP88-210ENST00000574867 WDR78Q5VTH9 848 aa19.71■□□□□ 0.75
NUP88-210ENST00000574867 WWC2Q6AWC2 1192 aa19.71■□□□□ 0.75
NUP88-210ENST00000574867 BARHL2Q9NY43 387 aa19.71■□□□□ 0.75
NUP88-210ENST00000574867 ORC3Q9UBD5 711 aaPredicted RBP19.71■□□□□ 0.75
NUP88-210ENST00000574867 IVNS1ABPQ9Y6Y0 642 aa19.71■□□□□ 0.75
NUP88-210ENST00000574867 FOXN1O15353 648 aa19.71■□□□□ 0.75
NUP88-210ENST00000574867 PPFIA3O75145 1194 aa19.71■□□□□ 0.75
NUP88-210ENST00000574867 CTCFP49711 727 aaPredicted RBP19.71■□□□□ 0.75
NUP88-210ENST00000574867 ARHGEF6Q15052 776 aa19.71■□□□□ 0.75
NUP88-210ENST00000574867 GPR142Q7Z601 462 aa19.71■□□□□ 0.75
NUP88-210ENST00000574867 FAM177A1Q8N128 213 aaPredicted RBP19.71■□□□□ 0.75
NUP88-210ENST00000574867 CCDC12Q8WUD4 166 aaPredicted RBP19.71■□□□□ 0.75
NUP88-210ENST00000574867 SMCHD1A6NHR9 2005 aa19.7■□□□□ 0.74
NUP88-210ENST00000574867 TNPO2O14787 897 aaKnown RBP19.7■□□□□ 0.74
NUP88-210ENST00000574867 STRNO43815 780 aa19.7■□□□□ 0.74
NUP88-210ENST00000574867 JAK2O60674 1132 aa19.7■□□□□ 0.74
NUP88-210ENST00000574867 HSPA8P11142 646 aaKnown RBP19.7■□□□□ 0.74
NUP88-210ENST00000574867 PLEKHH3Q7Z736 793 aa19.7■□□□□ 0.74
NUP88-210ENST00000574867 ABRAQ8N0Z2 381 aa19.7■□□□□ 0.74
NUP88-210ENST00000574867 GPKOWQ92917 476 aaPredicted RBP eCLIP19.7■□□□□ 0.74
NUP88-210ENST00000574867 COA7Q96BR5 231 aa19.7■□□□□ 0.74
NUP88-210ENST00000574867 TAL1P17542 331 aaPredicted RBP19.69■□□□□ 0.74
NUP88-210ENST00000574867 BECN1Q14457 450 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 MCF2L2Q86YR7 1114 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 CLEC4DQ8WXI8 215 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 INTS4Q96HW7 963 aaKnown RBP19.69■□□□□ 0.74
NUP88-210ENST00000574867 SH3GLB2Q9NR46 395 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 KIF3AQ9Y496 699 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 ZSWIM8A7E2V4 1837 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 PFASO15067 1338 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 STXBP3O00186 592 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 GNRH1P01148 92 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 FCER1AP12319 257 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 PSMC4P43686 418 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 NAPAP54920 295 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 KCTD2Q14681 263 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 MUM1L1Q5H9M0 696 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 TEX2Q8IWB9 1127 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 SAMD3Q8N6K7 520 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 RGS22Q8NE09 1264 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 CCDC148Q8NFR7 591 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 DDX11Q96FC9 970 aa19.69■□□□□ 0.74
NUP88-210ENST00000574867 FDPSP14324 419 aaKnown RBP19.68■□□□□ 0.74
NUP88-210ENST00000574867 XBP1P17861 261 aa19.68■□□□□ 0.74
NUP88-210ENST00000574867 CD99L2Q8TCZ2 262 aa19.68■□□□□ 0.74
NUP88-210ENST00000574867 TRIM47Q96LD4 638 aa19.68■□□□□ 0.74
NUP88-210ENST00000574867 MMP19Q99542 508 aa19.68■□□□□ 0.74
NUP88-210ENST00000574867 NFIBO00712 420 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 SOCS4Q8WXH5 440 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 ARHGAP39Q9C0H5 1083 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 ESYT2A0FGR8 921 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 SLC15A5A6NIM6 579 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 PTPREP23469 700 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 GHRHRQ02643 423 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 GRB14Q14449 540 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 ANKRD35Q8N283 1001 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 FAM184AQ8NB25 1140 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 ALG1Q9BT22 464 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 GLT8D2Q9H1C3 349 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 A1CFQ9NQ94 594 aaKnown RBP19.67■□□□□ 0.74
NUP88-210ENST00000574867 MAP3K20Q9NYL2 800 aaKnown RBP19.67■□□□□ 0.74
NUP88-210ENST00000574867 SMC3Q9UQE7 1217 aa19.67■□□□□ 0.74
NUP88-210ENST00000574867 CTGFP29279 349 aa19.66■□□□□ 0.74
NUP88-210ENST00000574867 OPLAHO14841 1288 aa19.66■□□□□ 0.74
NUP88-210ENST00000574867 HOXD10P28358 340 aa19.66■□□□□ 0.74
NUP88-210ENST00000574867 ANP32AP39687 249 aaKnown RBP19.66■□□□□ 0.74
NUP88-210ENST00000574867 TYW1BQ6NUM6 668 aa19.66■□□□□ 0.74
NUP88-210ENST00000574867 NSMFQ6X4W1 530 aa19.66■□□□□ 0.74
NUP88-210ENST00000574867 RNF207Q6ZRF8 634 aa19.66■□□□□ 0.74
NUP88-210ENST00000574867 VPS54Q9P1Q0 977 aa19.66■□□□□ 0.74
NUP88-210ENST00000574867 CASP8AP2Q9UKL3 1982 aa19.65■□□□□ 0.74
NUP88-210ENST00000574867 HSP90AA1P07900 732 aaKnown RBP19.65■□□□□ 0.74
NUP88-210ENST00000574867 CUL5Q93034 780 aa19.65■□□□□ 0.74
NUP88-210ENST00000574867 AIFM3Q96NN9 605 aa19.65■□□□□ 0.74
NUP88-210ENST00000574867 NUDT12Q9BQG2 462 aa19.65■□□□□ 0.74
NUP88-210ENST00000574867 ZMYND12Q9H0C1 365 aa19.65■□□□□ 0.74
NUP88-210ENST00000574867 CYP39A1Q9NYL5 469 aa19.65■□□□□ 0.74
NUP88-210ENST00000574867 ECM2O94769 699 aaPredicted RBP19.64■□□□□ 0.74
NUP88-210ENST00000574867 ADORA2AP29274 412 aa19.64■□□□□ 0.74
NUP88-210ENST00000574867 ADCY7P51828 1080 aa19.64■□□□□ 0.74
NUP88-210ENST00000574867 MORN1Q5T089 497 aa19.64■□□□□ 0.74
NUP88-210ENST00000574867 PSTPIP2Q9H939 334 aa19.64■□□□□ 0.74
NUP88-210ENST00000574867 SMCO2A6NFE2 343 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms