RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PPM1BO75688 479 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 ZNF205O95201 554 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 EPHX1P07099 455 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 ENDOUP21128 410 aaKnown RBP4.05□□□□□ -1.76
VPS35-208ENST00000568612 ARID5AQ03989 594 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 ZNF124Q15973 351 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 ANKRD39Q53RE8 183 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 HSP90AB4PQ58FF6 505 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 L1TD1Q5T7N2 865 aaKnown RBP4.05□□□□□ -1.76
VPS35-208ENST00000568612 NGEFQ8N5V2 710 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 POU5F2Q8N7G0 328 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.05□□□□□ -1.76
VPS35-208ENST00000568612 LINC01599Q8WXQ3 324 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 HHIPL1Q96JK4 782 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 FCRL2Q96LA5 508 aaPredicted RBP4.05□□□□□ -1.76
VPS35-208ENST00000568612 G6PC3Q9BUM1 346 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 SLC6A17Q9H1V8 727 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 KCNK12Q9HB15 430 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 DCP1AQ9NPI6 582 aaPredicted RBP4.05□□□□□ -1.76
VPS35-208ENST00000568612 PRR13Q9NZ81 148 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 WHRNQ9P202 907 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 GPR55Q9Y2T6 319 aaPredicted RBP4.05□□□□□ -1.76
VPS35-208ENST00000568612 SH3BP1Q9Y3L3 701 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 R3HCC1Q9Y3T6 440 aaKnown RBP4.05□□□□□ -1.76
VPS35-208ENST00000568612 FHOD1Q9Y613 1164 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 TAF6LQ9Y6J9 622 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.04□□□□□ -1.76
VPS35-208ENST00000568612 CBFA2T2O43439 604 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 C8AP07357 584 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 KIR2DL1P43626 348 aaPredicted RBP4.04□□□□□ -1.76
VPS35-208ENST00000568612 KIR2DL2P43627 348 aaPredicted RBP4.04□□□□□ -1.76
VPS35-208ENST00000568612 NOP2P46087 812 aaKnown RBP4.04□□□□□ -1.76
VPS35-208ENST00000568612 RTP1P59025 263 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 POU4F1Q01851 419 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 NR0B2Q15466 257 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 DPY19L1Q2PZI1 675 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 ADGRF1Q5T601 910 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 SYDE1Q6ZW31 735 aaPredicted RBP4.04□□□□□ -1.76
VPS35-208ENST00000568612 ZNF605Q86T29 641 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 JAMLQ86YT9 394 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 KRTAP1-3Q8IUG1 177 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 INTS4Q96HW7 963 aaKnown RBP4.04□□□□□ -1.76
VPS35-208ENST00000568612 FAM84AQ96KN4 292 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 SP110Q9HB58 689 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 GOLGA2P5Q9HBQ8 144 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 ERVK13-1Q9NX77 482 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 ACTR10Q9NZ32 417 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 RAI14Q9P0K7 980 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 NACADO15069 1562 aa4.04□□□□□ -1.76
VPS35-208ENST00000568612 STXBP3O00186 592 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 NRDCO43847 1150 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 VAMP4O75379 141 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 DDAH1O94760 285 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 NAT2P11245 290 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 IFNGR1P15260 489 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 YBX3P16989 372 aaKnown RBP eCLIP4.03□□□□□ -1.762e-6■■□□□ 11.4
VPS35-208ENST00000568612 ZSCAN20P17040 1043 aaPredicted RBP4.03□□□□□ -1.76
VPS35-208ENST00000568612 ETFBP38117 255 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 CASP7P55210 303 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 SATB1Q01826 763 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 TNNI3KQ59H18 835 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 NBPF6Q5VWK0 638 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 TMEM132EQ6IEE7 984 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 CASC1Q6TDU7 716 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 NBPF5PQ86XG9 351 aaPredicted RBP4.03□□□□□ -1.76
VPS35-208ENST00000568612 FAM177A1Q8N128 213 aaPredicted RBP4.03□□□□□ -1.76
VPS35-208ENST00000568612 OTUD6BQ8N6M0 293 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 FBXO15Q8NCQ5 510 aaPredicted RBP4.03□□□□□ -1.76
VPS35-208ENST00000568612 NUP43Q8NFH3 380 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 KLHL6Q8WZ60 621 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 NBPF4Q96M43 638 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 APBA2Q99767 749 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 TINF2Q9BSI4 451 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 SLC12A9Q9BXP2 914 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 KRTAP9-2Q9BYQ4 174 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 KLHL25Q9H0H3 589 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 TNFRSF10DQ9UBN6 386 aa4.03□□□□□ -1.76
VPS35-208ENST00000568612 DIS3Q9Y2L1 958 aaKnown RBP4.03□□□□□ -1.76
VPS35-208ENST00000568612 YBX2Q9Y2T7 364 aaKnown RBP4.03□□□□□ -1.76
VPS35-208ENST00000568612 A0A1W2PQJ5 194 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 ANKRD34BA5PLL1 514 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 WTIPA6NIX2 430 aaPredicted RBP4.02□□□□□ -1.77
VPS35-208ENST00000568612 FADS2P1A8MWK0 482 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 B2RBV5 119 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 TMEM253P0C7T8 217 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 PRKCAP17252 672 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 SDHBP21912 280 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 ARL4AP40617 200 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 KIR3DS1Q14943 382 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 SNX17Q15036 470 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 HSF5Q4G112 596 aaPredicted RBP4.02□□□□□ -1.77
VPS35-208ENST00000568612 RTP2Q5QGT7 225 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 GALNT18Q6P9A2 607 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 C6orf15Q6UXA7 325 aaPredicted RBP4.02□□□□□ -1.77
VPS35-208ENST00000568612 TSHZ1Q6ZSZ6 1077 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 TMTC2Q8N394 836 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 FCRL3Q96P31 734 aaPredicted RBP4.02□□□□□ -1.77
VPS35-208ENST00000568612 TSPYL1Q9H0U9 437 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 ZNF408Q9H9D4 720 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 LRP2BPQ9P2M1 347 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms