RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 FAM227BQ96M60 508 aa19.88■□□□□ 0.77
CLN3-231ENST00000568422 FAM161BQ96MY7 647 aa19.88■□□□□ 0.77
CLN3-231ENST00000568422 RANBP17Q9H2T7 1088 aaKnown RBP19.88■□□□□ 0.77
CLN3-231ENST00000568422 TBX21Q9UL17 535 aa19.88■□□□□ 0.77
CLN3-231ENST00000568422 CCPG1Q9ULG6 757 aa19.88■□□□□ 0.77
CLN3-231ENST00000568422 UNC80Q8N2C7 3258 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 LCTP09848 1927 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 TMEM265A0A087WTH1 108 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 CABYRO75952 493 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 IQSEC1Q6DN90 963 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 NOL8Q76FK4 1167 aaKnown RBP19.87■□□□□ 0.77
CLN3-231ENST00000568422 TTC14Q96N46 770 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 SEZ6LQ9BYH1 1024 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 SEMA6BQ9H3T3 888 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 Q9Y3F1 56 aa19.87■□□□□ 0.77
CLN3-231ENST00000568422 CCDC171Q6TFL3 1326 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 LOC102724159A0A0B4J2E5 919 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 TRIM6-TRIM34B2RNG4 842 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 CTAGE5O15320 804 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 TLR3O15455 904 aaKnown RBP19.86■□□□□ 0.77
CLN3-231ENST00000568422 ZEB2O60315 1214 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 NT5C2P49902 561 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 EPHB4P54760 987 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 PWP2Q15269 919 aaKnown RBP19.86■□□□□ 0.77
CLN3-231ENST00000568422 MUM1L1Q5H9M0 696 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 RRP12Q5JTH9 1297 aaKnown RBP19.86■□□□□ 0.77
CLN3-231ENST00000568422 MFSD5Q6N075 450 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 TLK2Q86UE8 772 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 TMEM47Q9BQJ4 181 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 AP5M1Q9H0R1 490 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 RWDD1Q9H446 243 aaPredicted RBP19.86■□□□□ 0.77
CLN3-231ENST00000568422 MTMR7Q9Y216 660 aa19.86■□□□□ 0.77
CLN3-231ENST00000568422 GNEQ9Y223 722 aaKnown RBP19.86■□□□□ 0.77
CLN3-231ENST00000568422 SNAP25P60880 206 aa19.85■□□□□ 0.77
CLN3-231ENST00000568422 IRX5P78411 483 aaPredicted RBP19.85■□□□□ 0.77
CLN3-231ENST00000568422 NMIQ13287 307 aaPredicted RBP19.85■□□□□ 0.77
CLN3-231ENST00000568422 PPIGQ13427 754 aaKnown RBP eCLIP19.85■□□□□ 0.776e-7■■□□□ 11.8
CLN3-231ENST00000568422 SYDE2Q5VT97 1194 aa19.85■□□□□ 0.77
CLN3-231ENST00000568422 MORC4Q8TE76 937 aa19.85■□□□□ 0.77
CLN3-231ENST00000568422 CDX2Q99626 313 aaPredicted RBP19.85■□□□□ 0.77
CLN3-231ENST00000568422 LNPKQ9C0E8 428 aa19.85■□□□□ 0.77
CLN3-231ENST00000568422 RNF41Q9H4P4 317 aaPredicted RBP19.85■□□□□ 0.77
CLN3-231ENST00000568422 VTA1Q9NP79 307 aa19.85■□□□□ 0.77
CLN3-231ENST00000568422 ADD3Q9UEY8 706 aaKnown RBP19.85■□□□□ 0.77
CLN3-231ENST00000568422 ASTN1O14525 1302 aa19.84■□□□□ 0.77
CLN3-231ENST00000568422 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.84■□□□□ 0.77
CLN3-231ENST00000568422 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.84■□□□□ 0.77
CLN3-231ENST00000568422 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.84■□□□□ 0.77
CLN3-231ENST00000568422 FSCN1Q16658 493 aaKnown RBP19.84■□□□□ 0.77
CLN3-231ENST00000568422 AKNAD1Q5T1N1 836 aa19.84■□□□□ 0.77
CLN3-231ENST00000568422 NSMFQ6X4W1 530 aa19.84■□□□□ 0.77
CLN3-231ENST00000568422 MFSD6Q6ZSS7 791 aa19.84■□□□□ 0.77
CLN3-231ENST00000568422 RASGRP2Q7LDG7 609 aa19.84■□□□□ 0.77
CLN3-231ENST00000568422 ZNF589Q86UQ0 364 aaPredicted RBP19.84■□□□□ 0.77
CLN3-231ENST00000568422 FAM126BQ8IXS8 530 aa19.84■□□□□ 0.77
CLN3-231ENST00000568422 SMC5Q8IY18 1101 aa19.84■□□□□ 0.77
CLN3-231ENST00000568422 RILPL2Q969X0 211 aa19.84■□□□□ 0.77
CLN3-231ENST00000568422 SLC16A2P36021 539 aa19.83■□□□□ 0.77
CLN3-231ENST00000568422 TTBK2Q6IQ55 1244 aa19.83■□□□□ 0.77
CLN3-231ENST00000568422 TAPT1Q6NXT6 567 aa19.83■□□□□ 0.77
CLN3-231ENST00000568422 TMEM199Q8N511 208 aa19.83■□□□□ 0.77
CLN3-231ENST00000568422 SLC43A3Q8NBI5 491 aa19.83■□□□□ 0.77
CLN3-231ENST00000568422 LAMA4Q16363 1823 aa19.82■□□□□ 0.76
CLN3-231ENST00000568422 DYNC1LI2O43237 492 aaPredicted RBP19.82■□□□□ 0.76
CLN3-231ENST00000568422 CD4P01730 458 aa19.82■□□□□ 0.76
CLN3-231ENST00000568422 PDHBP11177 359 aa19.82■□□□□ 0.76
CLN3-231ENST00000568422 SMPD1P17405 629 aa19.82■□□□□ 0.76
CLN3-231ENST00000568422 HAND2P61296 217 aa19.82■□□□□ 0.76
CLN3-231ENST00000568422 BEX3Q00994 111 aa19.82■□□□□ 0.76
CLN3-231ENST00000568422 TTYH1Q9H313 450 aaPredicted RBP19.82■□□□□ 0.76
CLN3-231ENST00000568422 OSBPL3Q9H4L5 887 aa19.82■□□□□ 0.76
CLN3-231ENST00000568422 CDH23Q9H251 3354 aa19.81■□□□□ 0.76
CLN3-231ENST00000568422 SDSP20132 328 aa19.81■□□□□ 0.76
CLN3-231ENST00000568422 ZNF543Q08ER8 600 aa19.81■□□□□ 0.76
CLN3-231ENST00000568422 BAATQ14032 418 aaPredicted RBP19.81■□□□□ 0.76
CLN3-231ENST00000568422 CXCL17Q6UXB2 119 aa19.81■□□□□ 0.76
CLN3-231ENST00000568422 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-231ENST00000568422 FBXO16Q8IX29 292 aaPredicted RBP19.81■□□□□ 0.76
CLN3-231ENST00000568422 ESR2Q92731 530 aa19.81■□□□□ 0.76
CLN3-231ENST00000568422 MPHOSPH6Q99547 160 aaKnown RBP19.81■□□□□ 0.76
CLN3-231ENST00000568422 GPCPD1Q9NPB8 672 aa19.81■□□□□ 0.76
CLN3-231ENST00000568422 PDGFCQ9NRA1 345 aa19.81■□□□□ 0.76
CLN3-231ENST00000568422 EYSQ5T1H1 3165 aa19.81■□□□□ 0.76
CLN3-231ENST00000568422 FRMPD2Q68DX3 1309 aaPredicted RBP19.8■□□□□ 0.76
CLN3-231ENST00000568422 SNHG28P0DPA3 235 aa19.8■□□□□ 0.76
CLN3-231ENST00000568422 ALDH5A1P51649 535 aaPredicted RBP19.8■□□□□ 0.76
CLN3-231ENST00000568422 ITGA7Q13683 1181 aa19.8■□□□□ 0.76
CLN3-231ENST00000568422 DUSP28Q4G0W2 176 aa19.8■□□□□ 0.76
CLN3-231ENST00000568422 CCDC178Q5BJE1 867 aa19.8■□□□□ 0.76
CLN3-231ENST00000568422 KIAA1211Q6ZU35 1233 aa19.8■□□□□ 0.76
CLN3-231ENST00000568422 EEPD1Q7L9B9 569 aa19.8■□□□□ 0.76
CLN3-231ENST00000568422 CHD1LQ86WJ1 897 aa19.8■□□□□ 0.76
CLN3-231ENST00000568422 DGKHQ86XP1 1220 aa19.8■□□□□ 0.76
CLN3-231ENST00000568422 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.8■□□□□ 0.763e-6■□□□□ 10.1
CLN3-231ENST00000568422 WDR19Q8NEZ3 1342 aa19.79■□□□□ 0.76
CLN3-231ENST00000568422 PTPDC1A2A3K4 754 aa19.79■□□□□ 0.76
CLN3-231ENST00000568422 HIP1O00291 1037 aa19.79■□□□□ 0.76
CLN3-231ENST00000568422 NFIBO00712 420 aa19.79■□□□□ 0.76
CLN3-231ENST00000568422 ZNF213O14771 459 aa19.79■□□□□ 0.76
CLN3-231ENST00000568422 NUCB1Q02818 461 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms