RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 TRAPPC11Q7Z392 1133 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 SPATS2Q86XZ4 545 aaKnown RBP12.05□□□□□ -0.48
PALB2-206ENST00000568219 CCDC50Q8IVM0 306 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 CCDC155Q8N6L0 562 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 SPDL1Q96EA4 605 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 RBM12Q9NTZ6 932 aaKnown RBP12.05□□□□□ -0.48
PALB2-206ENST00000568219 PHF20L1A8MW92 1017 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 PDE2AO00408 941 aaPredicted RBP12.05□□□□□ -0.48
PALB2-206ENST00000568219 PDHBP11177 359 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 NAPAP54920 295 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.05□□□□□ -0.48
PALB2-206ENST00000568219 PARP9Q8IXQ6 854 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 ANKRD42Q8N9B4 389 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 SPATA5Q8NB90 893 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 GREM2Q9H772 168 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 ADAMTS1Q9UHI8 967 aa12.05□□□□□ -0.48
PALB2-206ENST00000568219 TECP42680 631 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 AATFQ9NY61 560 aaKnown RBP eCLIP12.04□□□□□ -0.48
PALB2-206ENST00000568219 KIAA1210Q9ULL0 1709 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 PPP1R3GB7ZBB8 358 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 PAX7P23759 505 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 RFX5P48382 616 aaPredicted RBP12.04□□□□□ -0.48
PALB2-206ENST00000568219 TCIRG1Q13488 830 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 DCAF17Q5H9S7 520 aaPredicted RBP12.04□□□□□ -0.48
PALB2-206ENST00000568219 GIGYF2Q6Y7W6 1299 aaKnown RBP12.04□□□□□ -0.48
PALB2-206ENST00000568219 DDX42Q86XP3 938 aaKnown RBP eCLIP12.04□□□□□ -0.48
PALB2-206ENST00000568219 FNBP4Q8N3X1 1017 aaPredicted RBP12.04□□□□□ -0.48
PALB2-206ENST00000568219 ZNF622Q969S3 477 aaKnown RBP eCLIP12.04□□□□□ -0.484e-6■□□□□ 9.9
PALB2-206ENST00000568219 SNX12Q9UMY4 172 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 ANKRD62A6NC57 917 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 LGALS16A8MUM7 142 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 SLC8A1P32418 973 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 BCAMP50895 628 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 CCDC13Q8IYE1 715 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 ZNF444Q8N0Y2 327 aaPredicted RBP12.04□□□□□ -0.48
PALB2-206ENST00000568219 TBC1D5Q92609 795 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 DDX17Q92841 729 aaKnown RBP12.04□□□□□ -0.48
PALB2-206ENST00000568219 MRRFQ96E11 262 aaKnown RBP12.04□□□□□ -0.48
PALB2-206ENST00000568219 DCAF5Q96JK2 942 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 SLC40A1Q9NP59 571 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 TMOD3Q9NYL9 352 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 VWDEQ8N2E2 1590 aa12.04□□□□□ -0.48
PALB2-206ENST00000568219 ZCCHC11Q5TAX3 1644 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 CDC25CP30307 473 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 SSR1P43307 286 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 MAGOHP61326 146 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 DHX9Q08211 1270 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 SEPT7Q16181 437 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 CCDC6Q16204 474 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 CABP7Q86V35 215 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 PRPF38AQ8NAV1 312 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 MAGOHBQ96A72 148 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 ELAC2Q9BQ52 826 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 YIPF3Q9GZM5 350 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 SEC63Q9UGP8 760 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 SALL1Q9NSC2 1324 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 GMNCA6NCL1 334 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 SFMBT2Q5VUG0 894 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 NAIF1Q69YI7 327 aaPredicted RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 CCDC84Q86UT8 332 aaPredicted RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 EPN3Q9H201 632 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 ATG3Q9NT62 314 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 SOS2Q07890 1332 aaPredicted RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 TNRQ92752 1358 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 USP17L12C9JPN9 530 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 USP17L21D6R901 530 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 ATF3P18847 181 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 EEF1GP26641 437 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 CALML3P27482 149 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 ZKSCAN8Q15776 578 aaPredicted RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 PEX26Q7Z412 305 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 SUGP1Q8IWZ8 645 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 LCORLQ8N3X6 602 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 IGDCC4Q8TDY8 1250 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 CAPN6Q9Y6Q1 641 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 TARSL2A2RTX5 802 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 PSMD14O00487 310 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 PALMO75781 387 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 ABCB4P21439 1286 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 IKQ13123 557 aaPredicted RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 TMEM266Q2M3C6 531 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 SV2BQ7L1I2 683 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 TSEN2Q8NCE0 465 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 KCNV2Q8TDN2 545 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 STRBPQ96SI9 672 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 AGXT2Q9BYV1 514 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 GOLPH3Q9H4A6 298 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 MLXIPLQ9NP71 852 aa12.03□□□□□ -0.48
PALB2-206ENST00000568219 UTP11Q9Y3A2 253 aaKnown RBP12.03□□□□□ -0.48
PALB2-206ENST00000568219 RTL9Q8NET4 1388 aa12.02□□□□□ -0.48
PALB2-206ENST00000568219 MDH1P40925 334 aaKnown RBP12.02□□□□□ -0.48
PALB2-206ENST00000568219 LIFRP42702 1097 aa12.02□□□□□ -0.48
PALB2-206ENST00000568219 LACTBP83111 547 aaPredicted RBP12.02□□□□□ -0.48
PALB2-206ENST00000568219 MARCH10Q8NA82 808 aaPredicted RBP12.02□□□□□ -0.48
PALB2-206ENST00000568219 CCDC26Q8TAB7 109 aa12.02□□□□□ -0.48
PALB2-206ENST00000568219 MCM9Q9NXL9 1143 aa12.02□□□□□ -0.48
PALB2-206ENST00000568219 ALKQ9UM73 1620 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 A0A087X0B3 334 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 DPYDQ12882 1025 aa12.02□□□□□ -0.49
PALB2-206ENST00000568219 PDIA6Q15084 440 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms