RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 VPS37DQ86XT2 251 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 SMG8Q8ND04 991 aaKnown RBP7.42□□□□□ -1.22
VPS39-209ENST00000568029 UBASH3BQ8TF42 649 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 FRAT1Q92837 279 aaPredicted RBP7.42□□□□□ -1.22
VPS39-209ENST00000568029 RUSC1Q9BVN2 902 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 CAPN10Q9HC96 672 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 PIM2Q9P1W9 311 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 PASKQ96RG2 1323 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 PCDH11XQ9BZA7 1347 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 PCDH11YQ9BZA8 1340 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 ANKRD31Q8N7Z5 1873 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 ZNF831Q5JPB2 1677 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 C9orf172C9J069 976 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 RNF225M0QZC1 329 aaPredicted RBP7.41□□□□□ -1.22
VPS39-209ENST00000568029 IPO8O15397 1037 aaKnown RBP7.41□□□□□ -1.22
VPS39-209ENST00000568029 SLFN14P0C7P3 912 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 COL8A1P27658 744 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 TNNI2P48788 182 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 APOBRQ0VD83 1088 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 SEPT6Q14141 434 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 Q6ZS46 218 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 SREK1Q8WXA9 508 aaKnown RBP7.41□□□□□ -1.22
VPS39-209ENST00000568029 WDR18Q9BV38 432 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 CYP4F12Q9HCS2 524 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 PCDHGC5Q9Y5F6 944 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 ANKRD26Q9UPS8 1709 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 FER1L6Q2WGJ9 1857 aa7.41□□□□□ -1.22
VPS39-209ENST00000568029 F8W735 103 aaPredicted RBP7.4□□□□□ -1.22
VPS39-209ENST00000568029 FAM229AH3BQW9 127 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 AOC2O75106 756 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 WISP1O95388 367 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 BPNT1O95861 308 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 SELPP16109 830 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 SOX9P48436 509 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 GNAI1P63096 354 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 PTPN11Q06124 597 aaPredicted RBP7.4□□□□□ -1.22
VPS39-209ENST00000568029 EXOSC9Q06265 439 aaKnown RBP7.4□□□□□ -1.22
VPS39-209ENST00000568029 CWF19L2Q2TBE0 894 aaKnown RBP7.4□□□□□ -1.22
VPS39-209ENST00000568029 ZC3H12AQ5D1E8 599 aaKnown RBP7.4□□□□□ -1.22
VPS39-209ENST00000568029 ZKSCAN2Q63HK3 967 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 ANKRD34AQ69YU3 496 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 ACAD11Q709F0 780 aa7.4□□□□□ -1.22
VPS39-209ENST00000568029 REXO1Q8N1G1 1221 aaKnown RBP7.4□□□□□ -1.22
VPS39-209ENST00000568029 KIF20BQ96Q89 1820 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 GFRA2O00451 464 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 TIAF1O95411 115 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 HMOX1P09601 288 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 ATF4P18848 351 aaPredicted RBP7.39□□□□□ -1.23
VPS39-209ENST00000568029 ANP32AP39687 249 aaKnown RBP7.39□□□□□ -1.23
VPS39-209ENST00000568029 ARID5AQ03989 594 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 ALDH1L2Q3SY69 923 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 HDXQ7Z353 690 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 REC114Q7Z4M0 266 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 PANK1Q8TE04 598 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 JARID2Q92833 1246 aaPredicted RBP7.39□□□□□ -1.23
VPS39-209ENST00000568029 ARMC5Q96C12 935 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 ZC3H12CQ9C0D7 883 aaKnown RBP7.39□□□□□ -1.23
VPS39-209ENST00000568029 ATG3Q9NT62 314 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 SMC4Q9NTJ3 1288 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 STRIP2Q9ULQ0 834 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 PCDHA4Q9UN74 947 aa7.39□□□□□ -1.23
VPS39-209ENST00000568029 DDNO94850 711 aaPredicted RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 LIG1P18858 919 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 CRKP46108 304 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 ERVK-24P63145 666 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 RING1Q06587 406 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 GRIK4Q16099 956 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 CYFIP1Q7L576 1253 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 FTSJ3Q8IY81 847 aaKnown RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 DZIP1LQ8IYY4 767 aaKnown RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 NLGN1Q8N2Q7 840 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 RAPGEF4Q8WZA2 1011 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 SMARCC1Q92922 1105 aaPredicted RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 TSR2Q969E8 191 aaKnown RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 NKD1Q969G9 470 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 WDR89Q96FK6 387 aaPredicted RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 CHMP4BQ9H444 224 aaKnown RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 RWDD1Q9H446 243 aaPredicted RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 GSX1Q9H4S2 264 aaPredicted RBP7.38□□□□□ -1.23
VPS39-209ENST00000568029 AKTIPQ9H8T0 292 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 RAD18Q9NS91 495 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 IFT57Q9NWB7 429 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 UBP1Q9NZI7 540 aa7.38□□□□□ -1.23
VPS39-209ENST00000568029 NCAPD2Q15021 1401 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 RTL1A6NKG5 1358 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 KIF16BQ96L93 1317 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 POLRMTO00411 1230 aaKnown RBP7.37□□□□□ -1.23
VPS39-209ENST00000568029 ATE1O95260 518 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 AMPHP49418 695 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 SOX10P56693 466 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 ID3Q02535 119 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 EIF4A2Q14240 407 aaKnown RBP7.37□□□□□ -1.23
VPS39-209ENST00000568029 HSP90AB2PQ58FF8 381 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 LRFN4Q6PJG9 635 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 PHACTR3Q96KR7 559 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 CEP41Q9BYV8 373 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 MCOLN1Q9GZU1 580 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 EHMT1Q9H9B1 1298 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 CRIM1Q9NZV1 1036 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 LAS1LQ9Y4W2 734 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms