RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 KIFC2Q96AC6 838 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 NYAP2Q9P242 653 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 LCTP09848 1927 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 SCN10AQ9Y5Y9 1956 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 TET1Q8NFU7 2136 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 ASB14A6NK59 587 aa20.16■□□□□ 0.82
CDH3-205ENST00000566808 RFC2P35250 354 aa20.16■□□□□ 0.82
CDH3-205ENST00000566808 MRE11P49959 708 aa20.16■□□□□ 0.82
CDH3-205ENST00000566808 CNTN2Q02246 1040 aa20.16■□□□□ 0.82
CDH3-205ENST00000566808 GRB10Q13322 594 aa20.16■□□□□ 0.82
CDH3-205ENST00000566808 DEFB128Q7Z7B8 93 aa20.16■□□□□ 0.82
CDH3-205ENST00000566808 ACAD9Q9H845 621 aa20.16■□□□□ 0.82
CDH3-205ENST00000566808 Q9Y3F1 56 aa20.16■□□□□ 0.82
CDH3-205ENST00000566808 ZNF318Q5VUA4 2279 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 ARHGEF15O94989 841 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 ADD2P35612 726 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 HERC6Q8IVU3 1022 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 CD320Q9NPF0 282 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 HOMER2Q9NSB8 354 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 ARPP21Q9UBL0 812 aaPredicted RBP20.15■□□□□ 0.82
CDH3-205ENST00000566808 FEM1BQ9UK73 627 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 EXOC6BQ9Y2D4 811 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 TNKSO95271 1327 aa20.15■□□□□ 0.82
CDH3-205ENST00000566808 SIP14410 1827 aa20.14■□□□□ 0.81
CDH3-205ENST00000566808 KIF28PB7ZC32 967 aa20.14■□□□□ 0.81
CDH3-205ENST00000566808 DYNC1LI2O43237 492 aaPredicted RBP20.14■□□□□ 0.81
CDH3-205ENST00000566808 SMPD1P17405 629 aa20.14■□□□□ 0.81
CDH3-205ENST00000566808 ZKSCAN2Q63HK3 967 aa20.14■□□□□ 0.81
CDH3-205ENST00000566808 A1CFQ9NQ94 594 aaKnown RBP20.14■□□□□ 0.81
CDH3-205ENST00000566808 LMCD1Q9NZU5 365 aa20.14■□□□□ 0.81
CDH3-205ENST00000566808 LPXNO60711 386 aa20.13■□□□□ 0.81
CDH3-205ENST00000566808 CYP2C9P11712 490 aa20.13■□□□□ 0.81
CDH3-205ENST00000566808 CTR9Q6PD62 1173 aa20.13■□□□□ 0.81
CDH3-205ENST00000566808 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.13■□□□□ 0.81
CDH3-205ENST00000566808 IL1RAPL2Q9NP60 686 aa20.13■□□□□ 0.81
CDH3-205ENST00000566808 TRMT13Q9NUP7 481 aaKnown RBP20.13■□□□□ 0.81
CDH3-205ENST00000566808 COG6Q9Y2V7 657 aa20.13■□□□□ 0.81
CDH3-205ENST00000566808 SOWAHBA6NEL2 793 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 PITPNM1O00562 1244 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 FDX1P10109 184 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 RASA1P20936 1047 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 PTGS1P23219 599 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 HSP90AB4PQ58FF6 505 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 IQSEC1Q6DN90 963 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 SNX27Q96L92 541 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 SYNPO2Q9UMS6 1093 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 SLC4A4Q9Y6R1 1079 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 TRIOO75962 3097 aa20.12■□□□□ 0.81
CDH3-205ENST00000566808 BAIAP3O94812 1187 aa20.11■□□□□ 0.81
CDH3-205ENST00000566808 CEP85Q6P2H3 762 aa20.11■□□□□ 0.81
CDH3-205ENST00000566808 FBXO16Q8IX29 292 aaPredicted RBP20.11■□□□□ 0.81
CDH3-205ENST00000566808 GJD3Q8N144 294 aa20.11■□□□□ 0.81
CDH3-205ENST00000566808 UBE2ZQ9H832 354 aaPredicted RBP20.11■□□□□ 0.81
CDH3-205ENST00000566808 RNF146Q9NTX7 359 aa20.11■□□□□ 0.81
CDH3-205ENST00000566808 POLR3EQ9NVU0 708 aa20.11■□□□□ 0.81
CDH3-205ENST00000566808 PAG1Q9NWQ8 432 aa20.11■□□□□ 0.81
CDH3-205ENST00000566808 ALADP13716 330 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 NHLH1Q02575 133 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 SLFNL1Q499Z3 407 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 TAPT1Q6NXT6 567 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 FAM178BQ8IXR5 827 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 RPAP2Q8IXW5 612 aaPredicted RBP20.1■□□□□ 0.81
CDH3-205ENST00000566808 FTSJ3Q8IY81 847 aaKnown RBP20.1■□□□□ 0.81
CDH3-205ENST00000566808 RHPN1Q8TCX5 695 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 GDPD5Q8WTR4 605 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 KCNH6Q9H252 994 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 VTA1Q9NP79 307 aa20.1■□□□□ 0.81
CDH3-205ENST00000566808 TRIP12Q14669 1992 aaPredicted RBP20.1■□□□□ 0.81
CDH3-205ENST00000566808 ZNF316A6NFI3 1004 aaPredicted RBP20.09■□□□□ 0.81
CDH3-205ENST00000566808 CSPP1Q1MSJ5 1256 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 TKFCQ3LXA3 575 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 LEXMQ3ZCV2 418 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 SPRED2Q7Z698 418 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 ITPRIPQ8IWB1 547 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 CLASRPQ8N2M8 674 aaKnown RBP20.09■□□□□ 0.81
CDH3-205ENST00000566808 GMCL1P1Q8NEA9 526 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 UIMC1Q96RL1 719 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 FTOQ9C0B1 505 aaKnown RBP eCLIP20.09■□□□□ 0.81
CDH3-205ENST00000566808 MKNK2Q9HBH9 465 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 PDGFCQ9NRA1 345 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 CLIP2Q9UDT6 1046 aa20.09■□□□□ 0.81
CDH3-205ENST00000566808 IGKV6D-41A0A0C4DH26 115 aa20.08■□□□□ 0.81
CDH3-205ENST00000566808 IQCF3P0C7M6 154 aa20.08■□□□□ 0.81
CDH3-205ENST00000566808 KCNJ6P48051 423 aa20.08■□□□□ 0.81
CDH3-205ENST00000566808 PURAQ00577 322 aaKnown RBP20.08■□□□□ 0.81
CDH3-205ENST00000566808 UBE3CQ15386 1083 aa20.08■□□□□ 0.81
CDH3-205ENST00000566808 EEPD1Q7L9B9 569 aa20.08■□□□□ 0.81
CDH3-205ENST00000566808 ZNF536O15090 1300 aa20.07■□□□□ 0.8
CDH3-205ENST00000566808 IFIT2P09913 472 aaKnown RBP20.07■□□□□ 0.8
CDH3-205ENST00000566808 SSTR3P32745 418 aaPredicted RBP20.07■□□□□ 0.8
CDH3-205ENST00000566808 CPT1AP50416 773 aa20.07■□□□□ 0.8
CDH3-205ENST00000566808 STAT2P52630 851 aa20.07■□□□□ 0.8
CDH3-205ENST00000566808 DUSP28Q4G0W2 176 aa20.07■□□□□ 0.8
CDH3-205ENST00000566808 SBK1Q52WX2 424 aa20.07■□□□□ 0.8
CDH3-205ENST00000566808 FAM47CQ5HY64 1035 aa20.07■□□□□ 0.8
CDH3-205ENST00000566808 RETREG2Q8NC44 543 aa20.07■□□□□ 0.8
CDH3-205ENST00000566808 MKL1Q969V6 931 aa20.07■□□□□ 0.8
CDH3-205ENST00000566808 BMP3P12645 472 aa20.06■□□□□ 0.8
CDH3-205ENST00000566808 BFSP2Q13515 415 aa20.06■□□□□ 0.8
CDH3-205ENST00000566808 TMEM63BQ5T3F8 832 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms