RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PARP3Q9Y6F1 533 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 COL2A1P02458 1487 aaPredicted RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 CDK5RAP2Q96SN8 1893 aa7.02□□□□□ -1.28
CLN3-223ENST00000566472 PNMA6FA0A0J9YX94 578 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 PVALEFA0A1B0GWK0 134 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 USP17L5A8MUK1 530 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 KIF5CO60282 957 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 CCNT1O60563 726 aaKnown RBP7.02□□□□□ -1.29
CLN3-223ENST00000566472 TADA3O75528 432 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 GYPCP04921 128 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 GOLGA8HP0CJ92 632 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 AKR1B1P15121 316 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 H2AFXP16104 143 aaPredicted RBP7.02□□□□□ -1.29
CLN3-223ENST00000566472 PLCG1P19174 1290 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 PRCPP42785 496 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 GNG11P61952 73 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 MAP3K9P80192 1104 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 GOLGA8FQ08AF8 430 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 ZNF543Q08ER8 600 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 GOLGA8DPQ0D2H9 430 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 SEPT2Q15019 361 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 ELF2Q15723 593 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 TXNRD1Q16881 649 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 LETM2Q2VYF4 491 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 HSP90AA4PQ58FG1 418 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 PPP4R3AQ6IN85 833 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 TTI2Q6NXR4 508 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 CYP26C1Q6V0L0 522 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 DPP8Q6V1X1 898 aaPredicted RBP7.02□□□□□ -1.29
CLN3-223ENST00000566472 TOGARAM2Q6ZUX3 1019 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 PODNQ7Z5L7 613 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 SLC51AQ86UW1 340 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 TBCKQ8TEA7 893 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 P2RX5Q93086 422 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 TEKT1Q969V4 418 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 KIFC2Q96AC6 838 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 AKT1S1Q96B36 256 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 MTMR8Q96EF0 704 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 MASTLQ96GX5 879 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 TRIM47Q96LD4 638 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 MTMR9Q96QG7 549 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 TRIM9Q9C026 710 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 DHX36Q9H2U1 1008 aaKnown RBP7.02□□□□□ -1.29
CLN3-223ENST00000566472 RIC8AQ9NPQ8 531 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 TAB2Q9NYJ8 693 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 DDX41Q9UJV9 622 aaKnown RBP7.02□□□□□ -1.29
CLN3-223ENST00000566472 SYNPO2Q9UMS6 1093 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 GDAQ9Y2T3 454 aa7.02□□□□□ -1.29
CLN3-223ENST00000566472 ANKRD31Q8N7Z5 1873 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 SOWAHDA6NJG2 315 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 POTEB2H3BUK9 544 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 PLSCR1O15162 318 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 ATP8B1O43520 1251 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 URI1O94763 535 aaPredicted RBP7.01□□□□□ -1.29
CLN3-223ENST00000566472 FGFR1OPO95684 399 aaKnown RBP7.01□□□□□ -1.29
CLN3-223ENST00000566472 CASP14P31944 242 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 SHMT1P34896 483 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 HSPA1LP34931 641 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 CLK2P49760 499 aaKnown RBP7.01□□□□□ -1.29
CLN3-223ENST00000566472 DNM2P50570 870 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 MRPL12P52815 198 aaKnown RBP7.01□□□□□ -1.29
CLN3-223ENST00000566472 FAM193AP78312 1265 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 PDE4DQ08499 809 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 PDIA5Q14554 519 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 CALCRLQ16602 461 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 TMEM119Q4V9L6 283 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 FIGNQ5HY92 759 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 JAKMIP3Q5VZ66 844 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 STYK1Q6J9G0 422 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 MOXD1Q6UVY6 613 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 RAD9BQ6WBX8 426 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 ZNF662Q6ZS27 426 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 UNC13DQ70J99 1090 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 SV2BQ7L1I2 683 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 CERS5Q8N5B7 392 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 MB21D1Q8N884 522 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 ZNF507Q8TCN5 953 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 DCAF4Q8WV16 495 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 UBXN4Q92575 508 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 STAMQ92783 540 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 ZDHHC15Q96MV8 337 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 IDI2Q9BXS1 227 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 QTRT2Q9H974 415 aaKnown RBP7.01□□□□□ -1.29
CLN3-223ENST00000566472 DDX4Q9NQI0 724 aaKnown RBP7.01□□□□□ -1.29
CLN3-223ENST00000566472 ABHD10Q9NUJ1 306 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 USP40Q9NVE5 1235 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 NYAP2Q9P242 653 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 MRFAP1Q9Y605 127 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 GREB1LQ9C091 1923 aaPredicted RBP7.01□□□□□ -1.29
CLN3-223ENST00000566472 KDM3AQ9Y4C1 1321 aa7.01□□□□□ -1.29
CLN3-223ENST00000566472 MYH1P12882 1939 aa7□□□□□ -1.29
CLN3-223ENST00000566472 A0A1W2PQJ5 194 aa7□□□□□ -1.29
CLN3-223ENST00000566472 PP2D1A8MPX8 630 aa7□□□□□ -1.29
CLN3-223ENST00000566472 G3V3G9 751 aa7□□□□□ -1.29
CLN3-223ENST00000566472 ZBTB5O15062 677 aa7□□□□□ -1.29
CLN3-223ENST00000566472 TRIM37O94972 964 aa7□□□□□ -1.29
CLN3-223ENST00000566472 CCT6AP40227 531 aaKnown RBP7□□□□□ -1.29
CLN3-223ENST00000566472 CRKP46108 304 aa7□□□□□ -1.29
CLN3-223ENST00000566472 FXR1P51114 621 aaKnown RBP eCLIP7□□□□□ -1.29
CLN3-223ENST00000566472 ASIC1P78348 528 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms