RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SLC4A3P48751 1232 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 SMAD3P84022 425 aaKnown RBP20.1■□□□□ 0.81
CLN3-217ENST00000565354 C8orf34Q49A92 452 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 ASPRV1Q53RT3 343 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 SYNE3Q6ZMZ3 975 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 NUP133Q8WUM0 1156 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 TCEANC2Q96MN5 208 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 LY9Q9HBG7 655 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 PRDM5Q9NQX1 630 aaPredicted RBP20.1■□□□□ 0.81
CLN3-217ENST00000565354 A0A0G2JMZ2 1700 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 DHX16O60231 1041 aaKnown RBP20.09■□□□□ 0.81
CLN3-217ENST00000565354 SNHG28P0DPA3 235 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 SLC16A2P36021 539 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 TMEM132BQ14DG7 1078 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 SNX17Q15036 470 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 SYDE2Q5VT97 1194 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 OLFML2BQ68BL8 750 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 TTBK2Q6IQ55 1244 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 DPP9Q86TI2 863 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 NCAPG2Q86XI2 1143 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 CPXCR1Q8N123 301 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 BADQ92934 168 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 SENP2Q9HC62 589 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 ADAMTS5Q9UNA0 930 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 SMCHD1A6NHR9 2005 aa20.09■□□□□ 0.81
CLN3-217ENST00000565354 SEC24BO95487 1268 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 ADORA2AP29274 412 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 STAT3P40763 770 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 LIFRP42702 1097 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 TRIM60Q495X7 471 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 ZNF654Q8IZM8 581 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 MYLIPQ8WY64 445 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 MOV10L1Q9BXT6 1211 aaKnown RBP20.08■□□□□ 0.81
CLN3-217ENST00000565354 TTYH1Q9H313 450 aaPredicted RBP20.08■□□□□ 0.81
CLN3-217ENST00000565354 PRDM6Q9NQX0 595 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 GPHNQ9NQX3 736 aaPredicted RBP20.08■□□□□ 0.81
CLN3-217ENST00000565354 PRR12Q9ULL5 1215 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 SLC12A7Q9Y666 1083 aa20.08■□□□□ 0.81
CLN3-217ENST00000565354 ZNFX1Q9P2E3 1918 aaKnown RBP20.08■□□□□ 0.8
CLN3-217ENST00000565354 COL11A1P12107 1806 aaPredicted RBP20.07■□□□□ 0.8
CLN3-217ENST00000565354 SEPT4O43236 478 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 STRNO43815 780 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 SLC25A27O95847 323 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 CPA1P15085 419 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 COPB2P35606 906 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 EXOSC10Q01780 885 aaKnown RBP20.07■□□□□ 0.8
CLN3-217ENST00000565354 COL9A3Q14050 684 aaPredicted RBP20.07■□□□□ 0.8
CLN3-217ENST00000565354 ANO1Q5XXA6 986 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 CCDC174Q6PII3 467 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 BTNL9Q6UXG8 535 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 CTCFLQ8NI51 663 aaPredicted RBP20.07■□□□□ 0.8
CLN3-217ENST00000565354 TEX13BQ9BXU2 312 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 UPF2Q9HAU5 1272 aaKnown RBP20.07■□□□□ 0.8
CLN3-217ENST00000565354 SLC38A10Q9HBR0 1119 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 RAVER2Q9HCJ3 691 aaKnown RBP20.07■□□□□ 0.8
CLN3-217ENST00000565354 PDLIM7Q9NR12 457 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 NAP1L2Q9ULW6 460 aaPredicted RBP20.07■□□□□ 0.8
CLN3-217ENST00000565354 CYP46A1Q9Y6A2 500 aa20.07■□□□□ 0.8
CLN3-217ENST00000565354 DDAH1O94760 285 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 CALM1P0DP23 149 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 CALM2P0DP24 149 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 CALM3P0DP25 149 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 ERCC3P19447 782 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 RPS6KB1P23443 525 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 ANAPC15P60006 121 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 GRM4Q14833 912 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 C1orf53Q5VUE5 145 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 SNRNP48Q6IEG0 339 aaKnown RBP20.06■□□□□ 0.8
CLN3-217ENST00000565354 Q6ZUG5 572 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 SHCBP1Q8NEM2 672 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 UBA5Q9GZZ9 404 aa20.06■□□□□ 0.8
CLN3-217ENST00000565354 MUC3AQ02505 3323 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 TRIM43BA6NCK2 446 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 MYCNP04198 464 aaPredicted RBP20.05■□□□□ 0.8
CLN3-217ENST00000565354 FOSL2P15408 326 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 KIF5BP33176 963 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 ADCYAP1R1P41586 468 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 OAZ1P54368 228 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 SNAP25P60880 206 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 RUFY3Q7L099 469 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 SH3RF1Q7Z6J0 888 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 RIOX2Q8IUF8 465 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 REPS2Q8NFH8 660 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 TRIM43Q96BQ3 446 aaPredicted RBP20.05■□□□□ 0.8
CLN3-217ENST00000565354 MYL10Q9BUA6 226 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 MROH8Q9H579 483 aa20.05■□□□□ 0.8
CLN3-217ENST00000565354 ZNF214Q9UL59 606 aaPredicted RBP20.05■□□□□ 0.8
CLN3-217ENST00000565354 KLRF2D3W0D1 207 aa20.04■□□□□ 0.8
CLN3-217ENST00000565354 COBLO75128 1261 aa20.04■□□□□ 0.8
CLN3-217ENST00000565354 TROAPQ12815 778 aa20.04■□□□□ 0.8
CLN3-217ENST00000565354 LRRC41Q15345 812 aa20.04■□□□□ 0.8
CLN3-217ENST00000565354 SGMS1Q86VZ5 419 aa20.04■□□□□ 0.8
CLN3-217ENST00000565354 MICU3Q86XE3 530 aa20.04■□□□□ 0.8
CLN3-217ENST00000565354 STAG2Q8N3U4 1231 aa20.04■□□□□ 0.8
CLN3-217ENST00000565354 TM6SF1Q9BZW5 370 aa20.04■□□□□ 0.8
CLN3-217ENST00000565354 KLF18A0A0U1RQI7 1052 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 RAB11FIP4Q86YS3 637 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 SYMPKQ92797 1274 aaKnown RBP20.03■□□□□ 0.8
CLN3-217ENST00000565354 FERMT2Q96AC1 680 aa20.03■□□□□ 0.8
CLN3-217ENST00000565354 UPF3BQ9BZI7 483 aaKnown RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms