RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MCF2L2Q86YR7 1114 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 OXER1Q8TDS5 423 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 SYMPKQ92797 1274 aaKnown RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 CDK5RAP3Q96JB5 506 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 PRMT6Q96LA8 375 aaPredicted RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 PIGSQ96S52 555 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 BMP2KQ9NSY1 1161 aaPredicted RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 ZBTB21Q9ULJ3 1066 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 MRPL11Q9Y3B7 192 aaKnown RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 ABCB11O95342 1321 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 MYH4Q9Y623 1939 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 CYP3A7-CYP3A51PA0A087WV96 503 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 BICDL2A1A5D9 508 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 KIF2AO00139 706 aaPredicted RBP8.48□□□□□ -1.05
VPS39-204ENST00000561818 ACTN4O43707 911 aaKnown RBP8.48□□□□□ -1.05
VPS39-204ENST00000561818 MARCH6O60337 910 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 NDUFB10O96000 172 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 GH2P01242 217 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 TPM1P09493 284 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 CYP3A7P24462 503 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 CAP2P40123 477 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 CLK2P49760 499 aaKnown RBP8.48□□□□□ -1.05
VPS39-204ENST00000561818 ZNF75DP51815 510 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 PLCB2Q00722 1185 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 CXCL9Q07325 125 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 ZNF174Q15697 407 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 CDC37Q16543 378 aaPredicted RBP8.48□□□□□ -1.05
VPS39-204ENST00000561818 LETM2Q2VYF4 491 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 SLC4A8Q2Y0W8 1093 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 SUPT20HL1Q3ZLR7 823 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 FILIP1LQ4L180 1135 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 COBLL1Q53SF7 1204 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 CNNM4Q6P4Q7 775 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 KRT26Q7Z3Y9 468 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 SH3RF1Q7Z6J0 888 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 LUZP1Q86V48 1076 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 FAM114A1Q8IWE2 563 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 DRC7Q8IY82 874 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 GPC2Q8N158 579 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 TBCKQ8TEA7 893 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 GPKOWQ92917 476 aaPredicted RBP eCLIP8.48□□□□□ -1.05
VPS39-204ENST00000561818 FAM20AQ96MK3 541 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 DEFB129Q9H1M3 183 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 DNAJC18Q9H819 358 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 VCPKMTQ9H867 229 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 JMJD4Q9H9V9 463 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 VEZTQ9HBM0 779 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 SPON1Q9HCB6 807 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 PCDHA1Q9Y5I3 950 aa8.48□□□□□ -1.05
VPS39-204ENST00000561818 WNT10BO00744 389 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 PSMA7O14818 248 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 GOLGA8HP0CJ92 632 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 ATP2B1P20020 1258 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 LMNB1P20700 586 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 TERF1P54274 439 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 MDM2Q00987 491 aaPredicted RBP8.47□□□□□ -1.05
VPS39-204ENST00000561818 PSMD2Q13200 908 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 TRIM14Q14142 442 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 MORC3Q14149 939 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 INF2Q27J81 1249 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 LONRF3Q496Y0 759 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 XRRA1Q6P2D8 792 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 AOPEPQ8N6M6 819 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 IGSF22Q8N9C0 903 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 RBM46Q8TBY0 533 aaKnown RBP8.47□□□□□ -1.05
VPS39-204ENST00000561818 NEK9Q8TD19 979 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 DHX58Q96C10 678 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 CLIC6Q96NY7 704 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 FEZ1Q99689 392 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 ZNF341Q9BYN7 854 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 KIAA1683Q9H0B3 1180 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 GPCPD1Q9NPB8 672 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 DDX25Q9UHL0 483 aaKnown RBP8.47□□□□□ -1.05
VPS39-204ENST00000561818 BCS1LQ9Y276 419 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 PCDHA5Q9Y5H7 936 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 FRMPD2Q68DX3 1309 aaPredicted RBP8.47□□□□□ -1.05
VPS39-204ENST00000561818 MYPNQ86TC9 1320 aa8.47□□□□□ -1.05
VPS39-204ENST00000561818 PVALEFA0A1B0GWK0 134 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 TCP10L2B9ZVM9 353 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 C19orf81C9J6K1 198 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 SMIM22K7EJ46 135 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 ZBTB7AO95365 584 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 SERPINC1P01008 464 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 LMOD1P29536 600 aaPredicted RBP8.46□□□□□ -1.06
VPS39-204ENST00000561818 CIITAP33076 1130 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 SREBF1P36956 1147 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 OAZ1P54368 228 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 DPYDQ12882 1025 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 E2F4Q16254 413 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 TPD52L1Q16890 204 aaPredicted RBP8.46□□□□□ -1.06
VPS39-204ENST00000561818 QRICH1Q2TAL8 776 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 KIF4BQ2VIQ3 1234 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 DPCR1Q3MIW9 517 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 Q4G0T1 1027 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 TPRNQ4KMQ1 711 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 ZNF658Q5TYW1 1059 aaPredicted RBP8.46□□□□□ -1.06
VPS39-204ENST00000561818 SPATA1Q5VX52 437 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 SH3BP5LQ7L8J4 393 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 CABP7Q86V35 215 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 DHX40Q8IX18 779 aaKnown RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms