RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CYP39A1Q9NYL5 469 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 ZMYM6O95789 1325 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 NEDD4P46934 1319 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 ASB14A6NK59 587 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 HIP1O00291 1037 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 KDM4AO75164 1064 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 ASGR1P07306 291 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 GOLGA8HP0CJ92 632 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 PCP11498 1178 aaKnown RBP12.02□□□□□ -0.49
LDLR-214ENST00000560628 PTGS1P23219 599 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 ITGB8P26012 769 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 TNFAIP2Q03169 654 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 ZNF543Q08ER8 600 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 BAATQ14032 418 aaPredicted RBP12.02□□□□□ -0.49
LDLR-214ENST00000560628 SHHQ15465 462 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 NUP133Q8WUM0 1156 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 SPC25Q9HBM1 224 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 PDGFCQ9NRA1 345 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 ASTN1O14525 1302 aa12.02□□□□□ -0.49
LDLR-214ENST00000560628 MOXD2PA6NHM9 499 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 B4E1Z4 1266 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 NFIBO00712 420 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 CLTBP09497 229 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 GJA9P57773 515 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 BEX3Q00994 111 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 FAAP100Q0VG06 881 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 C9orf50Q5SZB4 431 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 TMEM63BQ5T3F8 832 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 PCSK9Q8NBP7 692 aaKnown RBP12.01□□□□□ -0.49
LDLR-214ENST00000560628 UBA5Q9GZZ9 404 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 UPF3AQ9H1J1 476 aaKnown RBP12.01□□□□□ -0.49
LDLR-214ENST00000560628 CPVLQ9H3G5 476 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 TMEM39AQ9NV64 488 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 ZSWIM5Q9P217 1185 aa12.01□□□□□ -0.49
LDLR-214ENST00000560628 SZT2Q5T011 3432 aa12□□□□□ -0.49
LDLR-214ENST00000560628 PTPDC1A2A3K4 754 aa12□□□□□ -0.49
LDLR-214ENST00000560628 DCDC2CA8MYV0 355 aa12□□□□□ -0.49
LDLR-214ENST00000560628 CTAGE5O15320 804 aa12□□□□□ -0.49
LDLR-214ENST00000560628 DYNC1LI2O43237 492 aaPredicted RBP12□□□□□ -0.49
LDLR-214ENST00000560628 RAG1P15918 1043 aa12□□□□□ -0.49
LDLR-214ENST00000560628 SMPD1P17405 629 aa12□□□□□ -0.49
LDLR-214ENST00000560628 CALML3P27482 149 aa12□□□□□ -0.49
LDLR-214ENST00000560628 CST5P28325 142 aaPredicted RBP12□□□□□ -0.49
LDLR-214ENST00000560628 GPR153Q6NV75 609 aa12□□□□□ -0.49
LDLR-214ENST00000560628 IQCA1Q86XH1 822 aa12□□□□□ -0.49
LDLR-214ENST00000560628 DGKHQ86XP1 1220 aa12□□□□□ -0.49
LDLR-214ENST00000560628 FBXO16Q8IX29 292 aaPredicted RBP12□□□□□ -0.49
LDLR-214ENST00000560628 CLEC4DQ8WXI8 215 aa12□□□□□ -0.49
LDLR-214ENST00000560628 GLT1D1Q96MS3 346 aa12□□□□□ -0.49
LDLR-214ENST00000560628 DSCC1Q9BVC3 393 aa12□□□□□ -0.49
LDLR-214ENST00000560628 AP5M1Q9H0R1 490 aa12□□□□□ -0.49
LDLR-214ENST00000560628 IL25Q9H293 177 aa12□□□□□ -0.49
LDLR-214ENST00000560628 MTMR10Q9NXD2 777 aa12□□□□□ -0.49
LDLR-214ENST00000560628 CTNNA3Q9UI47 895 aa12□□□□□ -0.49
LDLR-214ENST00000560628 MCM3APO60318 1980 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 DNAH12Q6ZR08 3092 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 KIAA0355O15063 1070 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 SNHG28P0DPA3 235 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 GSPT1P15170 499 aaKnown RBP11.99□□□□□ -0.49
LDLR-214ENST00000560628 CDK7P50613 346 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 EPHB4P54760 987 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 IMMTQ16891 758 aaKnown RBP11.99□□□□□ -0.49
LDLR-214ENST00000560628 TTC22Q5TAA0 569 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 IQSEC1Q6DN90 963 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 TAPT1Q6NXT6 567 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 CXCL17Q6UXB2 119 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 KIAA1211Q6ZU35 1233 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 ANKRD33Q7Z3H0 272 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 PNMA1Q8ND90 353 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 FAM161BQ96MY7 647 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 TOX2Q96NM4 488 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 ZSCAN10Q96SZ4 725 aaPredicted RBP11.99□□□□□ -0.49
LDLR-214ENST00000560628 KAT14Q9H8E8 782 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 GNEQ9Y223 722 aaKnown RBP11.99□□□□□ -0.49
LDLR-214ENST00000560628 ELP1O95163 1332 aa11.99□□□□□ -0.49
LDLR-214ENST00000560628 ARVCFO00192 962 aa11.98□□□□□ -0.49
LDLR-214ENST00000560628 ALDH5A1P51649 535 aaPredicted RBP11.98□□□□□ -0.49
LDLR-214ENST00000560628 FSCN1Q16658 493 aaKnown RBP11.98□□□□□ -0.49
LDLR-214ENST00000560628 USH1GQ495M9 461 aa11.98□□□□□ -0.49
LDLR-214ENST00000560628 CCDC178Q5BJE1 867 aa11.98□□□□□ -0.49
LDLR-214ENST00000560628 GPATCH4Q5T3I0 446 aaKnown RBP11.98□□□□□ -0.49
LDLR-214ENST00000560628 SLC30A10Q6XR72 485 aa11.98□□□□□ -0.49
LDLR-214ENST00000560628 RNF207Q6ZRF8 634 aa11.98□□□□□ -0.49
LDLR-214ENST00000560628 TLK2Q86UE8 772 aa11.98□□□□□ -0.49
LDLR-214ENST00000560628 ENAHQ8N8S7 591 aaPredicted RBP11.98□□□□□ -0.49
LDLR-214ENST00000560628 ANKS1AQ92625 1134 aa11.98□□□□□ -0.49
LDLR-214ENST00000560628 VAT1LQ9HCJ6 419 aa11.98□□□□□ -0.49
LDLR-214ENST00000560628 ADD3Q9UEY8 706 aaKnown RBP11.98□□□□□ -0.49
LDLR-214ENST00000560628 A0A0U1RQG5 324 aaPredicted RBP11.97□□□□□ -0.49
LDLR-214ENST00000560628 RPS6P62753 249 aaKnown RBP11.97□□□□□ -0.49
LDLR-214ENST00000560628 NKX3-2P78367 333 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 ADGRF4Q8IZF3 695 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 MORC4Q8TE76 937 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 TBC1D5Q92609 795 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 UBAC1Q9BSL1 405 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 WDR11Q9BZH6 1224 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 KRT23Q9C075 422 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 VTA1Q9NP79 307 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 PNMA2Q9UL42 364 aa11.97□□□□□ -0.49
LDLR-214ENST00000560628 TNKSO95271 1327 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms