RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 FPGSQ05932 587 aa14.76□□□□□ -0.05
SNX1-209ENST00000559961 GPATCH4Q5T3I0 446 aaKnown RBP14.76□□□□□ -0.05
SNX1-209ENST00000559961 FAM109BQ6ICB4 259 aaPredicted RBP14.76□□□□□ -0.05
SNX1-209ENST00000559961 BTNL9Q6UXG8 535 aa14.76□□□□□ -0.05
SNX1-209ENST00000559961 ANKRD33Q7Z3H0 272 aa14.76□□□□□ -0.05
SNX1-209ENST00000559961 PLEKHM2Q8IWE5 1019 aa14.76□□□□□ -0.05
SNX1-209ENST00000559961 EXOC6Q8TAG9 804 aa14.76□□□□□ -0.05
SNX1-209ENST00000559961 KAT14Q9H8E8 782 aa14.76□□□□□ -0.05
SNX1-209ENST00000559961 CYP39A1Q9NYL5 469 aa14.76□□□□□ -0.05
SNX1-209ENST00000559961 ZNF536O15090 1300 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 FRMPD2Q68DX3 1309 aaPredicted RBP14.75□□□□□ -0.05
SNX1-209ENST00000559961 LOC102724159A0A0B4J2E5 919 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 TRIM43BA6NCK2 446 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 KIAA0355O15063 1070 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 DYNC1LI2O43237 492 aaPredicted RBP14.75□□□□□ -0.05
SNX1-209ENST00000559961 PWP2Q15269 919 aaKnown RBP14.75□□□□□ -0.05
SNX1-209ENST00000559961 SHHQ15465 462 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 KIAA1211Q6ZU35 1233 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 ZNF589Q86UQ0 364 aaPredicted RBP14.75□□□□□ -0.05
SNX1-209ENST00000559961 DGKHQ86XP1 1220 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 TRIM43Q96BQ3 446 aaPredicted RBP14.75□□□□□ -0.05
SNX1-209ENST00000559961 KRT23Q9C075 422 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 RANBP17Q9H2T7 1088 aaKnown RBP14.75□□□□□ -0.05
SNX1-209ENST00000559961 CNNM2Q9H8M5 875 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 VTA1Q9NP79 307 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 GPHNQ9NQX3 736 aaPredicted RBP14.75□□□□□ -0.05
SNX1-209ENST00000559961 STXBP5LQ9Y2K9 1186 aa14.75□□□□□ -0.05
SNX1-209ENST00000559961 ARVCFO00192 962 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 DHX16O60231 1041 aaKnown RBP14.74□□□□□ -0.05
SNX1-209ENST00000559961 NOVP48745 357 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 PDE4DQ08499 809 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 TRDNQ13061 729 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 BAATQ14032 418 aaPredicted RBP14.74□□□□□ -0.05
SNX1-209ENST00000559961 FSCN1Q16658 493 aaKnown RBP14.74□□□□□ -0.05
SNX1-209ENST00000559961 MUM1L1Q5H9M0 696 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 TTBK2Q6IQ55 1244 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 RNF207Q6ZRF8 634 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 Q7L0L9 218 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 SH3RF1Q7Z6J0 888 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 TLK2Q86UE8 772 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 TMEM199Q8N511 208 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 RUFY2Q8WXA3 655 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 RNPC3Q96LT9 517 aaKnown RBP14.74□□□□□ -0.05
SNX1-209ENST00000559961 UBAC1Q9BSL1 405 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 UPF3AQ9H1J1 476 aaKnown RBP14.74□□□□□ -0.05
SNX1-209ENST00000559961 MTMR10Q9NXD2 777 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 Q9Y3F1 56 aa14.74□□□□□ -0.05
SNX1-209ENST00000559961 RAD50Q92878 1312 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 GREB1LQ9C091 1923 aaPredicted RBP14.73□□□□□ -0.05
SNX1-209ENST00000559961 SOWAHBA6NEL2 793 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 TIMP1P01033 207 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 IGHDP01880 384 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 PDHBP11177 359 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 CALML3P27482 149 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 ZNF543Q08ER8 600 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 PPIGQ13427 754 aaKnown RBP eCLIP14.73□□□□□ -0.051e-8■■□□□ 13.5
SNX1-209ENST00000559961 EEPD1Q7L9B9 569 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 DSCC1Q9BVC3 393 aa14.73□□□□□ -0.05
SNX1-209ENST00000559961 KDM4AO75164 1064 aa14.72□□□□□ -0.05
SNX1-209ENST00000559961 SMAD3P84022 425 aaKnown RBP14.72□□□□□ -0.05
SNX1-209ENST00000559961 FAAP100Q0VG06 881 aa14.72□□□□□ -0.05
SNX1-209ENST00000559961 CCSAPQ6IQ19 270 aaPredicted RBP14.72□□□□□ -0.05
SNX1-209ENST00000559961 PNMA1Q8ND90 353 aa14.72□□□□□ -0.05
SNX1-209ENST00000559961 ZSCAN10Q96SZ4 725 aaPredicted RBP14.72□□□□□ -0.05
SNX1-209ENST00000559961 ZKSCAN3Q9BRR0 538 aa14.72□□□□□ -0.05
SNX1-209ENST00000559961 MTIF3Q9H2K0 278 aaKnown RBP14.72□□□□□ -0.05
SNX1-209ENST00000559961 ALPK3Q96L96 1907 aa14.72□□□□□ -0.05
SNX1-209ENST00000559961 COL11A1P12107 1806 aaPredicted RBP14.71□□□□□ -0.05
SNX1-209ENST00000559961 MYADML2A6NDP7 307 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 CPT1AP50416 773 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 ALDH5A1P51649 535 aaPredicted RBP14.71□□□□□ -0.05
SNX1-209ENST00000559961 BEX3Q00994 111 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 C9orf50Q5SZB4 431 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 MFSD5Q6N075 450 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 MCF2L2Q86YR7 1114 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 TBC1D10CQ8IV04 446 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 FBXO16Q8IX29 292 aaPredicted RBP14.71□□□□□ -0.05
SNX1-209ENST00000559961 FGD4Q96M96 766 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 FAM161BQ96MY7 647 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 WDR11Q9BZH6 1224 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 POLR3EQ9NVU0 708 aa14.71□□□□□ -0.05
SNX1-209ENST00000559961 SUPT16HQ9Y5B9 1047 aaKnown RBP14.71□□□□□ -0.05
SNX1-209ENST00000559961 MYH4Q9Y623 1939 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 WDR19Q8NEZ3 1342 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.7□□□□□ -0.06
SNX1-209ENST00000559961 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.7□□□□□ -0.06
SNX1-209ENST00000559961 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.7□□□□□ -0.06
SNX1-209ENST00000559961 ERICH2A1L162 156 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 NKRFO15226 690 aaKnown RBP eCLIP14.7□□□□□ -0.06
SNX1-209ENST00000559961 PARP1P09874 1014 aaKnown RBP14.7□□□□□ -0.06
SNX1-209ENST00000559961 SMPD1P17405 629 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 TRAF1Q13077 416 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 ITGA7Q13683 1181 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 USH1GQ495M9 461 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 ASPRV1Q53RT3 343 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 CXCL17Q6UXB2 119 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 DNERQ8NFT8 737 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 MAF1Q9H063 256 aa14.7□□□□□ -0.06
SNX1-209ENST00000559961 ZNFX1Q9P2E3 1918 aaKnown RBP14.7□□□□□ -0.06
SNX1-209ENST00000559961 B4E1Z4 1266 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms