RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.64□□□□□ -0.557e-6■□□□□ 10.8
USP3-216ENST00000559873 NBPF11Q86T75 865 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 CMTR1Q8N1G2 835 aaKnown RBP11.64□□□□□ -0.55
USP3-216ENST00000559873 ANKRD35Q8N283 1001 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 CCDC82Q8N4S0 544 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 PIBF1Q8WXW3 757 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 WASF1Q92558 559 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 TRIM47Q96LD4 638 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 LARP6Q9BRS8 491 aaKnown RBP11.64□□□□□ -0.55
USP3-216ENST00000559873 NCOA5Q9HCD5 579 aaKnown RBP11.64□□□□□ -0.55
USP3-216ENST00000559873 FAM217BQ9NTX9 383 aaPredicted RBP11.64□□□□□ -0.55
USP3-216ENST00000559873 SRRDQ9UH36 339 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 PCDHA1Q9Y5I3 950 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 ZNF236Q9UL36 1845 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 STK36Q9NRP7 1315 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 DEXIO95424 95 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 SSRP1Q08945 709 aaKnown RBP11.63□□□□□ -0.55
USP3-216ENST00000559873 GRB14Q14449 540 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 PKN2Q16513 984 aaKnown RBP11.63□□□□□ -0.55
USP3-216ENST00000559873 HEATR3Q7Z4Q2 680 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 TEX2Q8IWB9 1127 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 CCDC148Q8NFR7 591 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 RAET1EQ8TD07 263 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 DDX11Q96FC9 970 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 APBA2Q99767 749 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 SLC26A6Q9BXS9 759 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 ARHGAP39Q9C0H5 1083 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 KIF3AQ9Y496 699 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 RIPK3Q9Y572 518 aa11.63□□□□□ -0.55
USP3-216ENST00000559873 MGAMO43451 1857 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 PRPF3O43395 683 aaKnown RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 ECM2O94769 699 aaPredicted RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 XBP1P17861 261 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 ADORA2AP29274 412 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 NAPAP54920 295 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 PRKCZQ05513 592 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 FUT2Q10981 343 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 MAP2K5Q13163 448 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 NTRK3Q16288 839 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 PFKFB3Q16875 520 aaPredicted RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 SLC35G1Q2M3R5 365 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 NSMFQ6X4W1 530 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 RNF207Q6ZRF8 634 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 OTOP1Q7RTM1 612 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 DPP9Q86TI2 863 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 HSCBQ8IWL3 235 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 TRMT44Q8IYL2 757 aaKnown RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 SAMD3Q8N6K7 520 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 RGS22Q8NE09 1264 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 CUL5Q93034 780 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 MPHOSPH6Q99547 160 aaKnown RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 LLPHQ9BRT6 129 aaKnown RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 GLT8D2Q9H1C3 349 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 MAP3K20Q9NYL2 800 aaKnown RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 V9GY48 417 aaPredicted RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 PLXNB2O15031 1838 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 MYH6P13533 1939 aa11.62□□□□□ -0.55
USP3-216ENST00000559873 RBBP6Q7Z6E9 1792 aaKnown RBP11.62□□□□□ -0.55
USP3-216ENST00000559873 CASP8AP2Q9UKL3 1982 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 BAZ2BQ9UIF8 2168 aaKnown RBP11.61□□□□□ -0.55
USP3-216ENST00000559873 PTPDC1A2A3K4 754 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 LARGE1O95461 756 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 HOXC6P09630 235 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 XRCC5P13010 732 aaKnown RBP11.61□□□□□ -0.55
USP3-216ENST00000559873 SCG2P13521 617 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 FLT3LGP49771 235 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 HMGN5P82970 282 aaKnown RBP11.61□□□□□ -0.55
USP3-216ENST00000559873 IRF5Q13568 498 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 MORN1Q5T089 497 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 CCDC83Q8IWF9 413 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 FAM177A1Q8N128 213 aaPredicted RBP11.61□□□□□ -0.55
USP3-216ENST00000559873 SLAIN1Q8ND83 568 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 PHKBQ93100 1093 aa11.61□□□□□ -0.55
USP3-216ENST00000559873 A1CFQ9NQ94 594 aaKnown RBP11.61□□□□□ -0.55
USP3-216ENST00000559873 ADD3Q9UEY8 706 aaKnown RBP11.61□□□□□ -0.55
USP3-216ENST00000559873 B4DLN1 442 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 POTEB2H3BUK9 544 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 NFIBO00712 420 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 PPP1R11O60927 126 aaPredicted RBP11.6□□□□□ -0.55
USP3-216ENST00000559873 CTGFP29279 349 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 MRPL12P52815 198 aaKnown RBP11.6□□□□□ -0.55
USP3-216ENST00000559873 MUM1L1Q5H9M0 696 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 WWC2Q6AWC2 1192 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 FBXO46Q6PJ61 603 aaPredicted RBP11.6□□□□□ -0.55
USP3-216ENST00000559873 NECAB1Q8N987 351 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 GPKOWQ92917 476 aaPredicted RBP eCLIP11.6□□□□□ -0.55
USP3-216ENST00000559873 TMX3Q96JJ7 454 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 BARHL2Q9NY43 387 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 DIS3Q9Y2L1 958 aaKnown RBP11.6□□□□□ -0.55
USP3-216ENST00000559873 PTPN22Q9Y2R2 807 aa11.6□□□□□ -0.55
USP3-216ENST00000559873 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.6□□□□□ -0.55
USP3-216ENST00000559873 ZSWIM8A7E2V4 1837 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 LOC102724159A0A0B4J2E5 919 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 hCG_1642624A0A1W2PR95 340 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 GCOM1H8Y6P7 765 aaPredicted RBP11.59□□□□□ -0.55
USP3-216ENST00000559873 K7ELQ4 463 aaPredicted RBP11.59□□□□□ -0.55
USP3-216ENST00000559873 CFBP00751 764 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 POLR2MP0CAP2 368 aa11.59□□□□□ -0.55
USP3-216ENST00000559873 TAL1P17542 331 aaPredicted RBP11.59□□□□□ -0.55
USP3-216ENST00000559873 CYP2B6P20813 491 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms