RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 CTAGE5O15320 804 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 RANBP6O60518 1105 aaKnown RBP10.84□□□□□ -0.67
HDDC3-204ENST00000559834 CD4P01730 458 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 FGBP02675 491 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 CTDSPL2Q05D32 466 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 RASIP1Q5U651 963 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 CXCL17Q6UXB2 119 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 NSMFQ6X4W1 530 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 KCTD1Q719H9 257 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 C16orf59Q7L2K0 433 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 SLC43A3Q8NBI5 491 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 CHMP4CQ96CF2 233 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 EVI5LQ96CN4 794 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 HIPK3Q9H422 1215 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 IL23AQ9NPF7 189 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 IL17RBQ9NRM6 502 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 CYP39A1Q9NYL5 469 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 ADD3Q9UEY8 706 aaKnown RBP10.84□□□□□ -0.67
HDDC3-204ENST00000559834 ANAPC4Q9UJX5 808 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 CCPG1Q9ULG6 757 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.84□□□□□ -0.67
HDDC3-204ENST00000559834 PCDHB15Q9Y5E8 787 aa10.84□□□□□ -0.67
HDDC3-204ENST00000559834 CUL9Q8IWT3 2517 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 LOC102724159A0A0B4J2E5 919 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 ICAM1P05362 532 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 SUPT20HL2P0C7V6 817 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 ACRP10323 421 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 SMPD1P17405 629 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 CYP2C18P33260 490 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 PWP2Q15269 919 aaKnown RBP10.83□□□□□ -0.68
HDDC3-204ENST00000559834 ALX1Q15699 326 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 RAB30Q15771 203 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 CCDC96Q2M329 555 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 KIAA1211Q6ZU35 1233 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 EEPD1Q7L9B9 569 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 TICAM2Q86XR7 235 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 RPUSD2Q8IZ73 545 aaKnown RBP10.83□□□□□ -0.68
HDDC3-204ENST00000559834 DCAF4Q8WV16 495 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 HERVK_113Q902F9 699 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 MPHOSPH6Q99547 160 aaKnown RBP10.83□□□□□ -0.68
HDDC3-204ENST00000559834 PBX4Q9BYU1 374 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 VTA1Q9NP79 307 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 HELLSQ9NRZ9 838 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 TOMM22Q9NS69 142 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 MTMR7Q9Y216 660 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 MYH4Q9Y623 1939 aa10.83□□□□□ -0.68
HDDC3-204ENST00000559834 B4DLN1 442 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 ORC4O43929 436 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 NMT2O60551 498 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 FGRP09769 529 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 TOP1P11387 765 aaKnown RBP10.82□□□□□ -0.68
HDDC3-204ENST00000559834 NOVP48745 357 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 MRPL12P52815 198 aaKnown RBP10.82□□□□□ -0.68
HDDC3-204ENST00000559834 SNAP25P60880 206 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 BRDTQ58F21 947 aaPredicted RBP10.82□□□□□ -0.68
HDDC3-204ENST00000559834 MUM1L1Q5H9M0 696 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 ANKRD45Q5TZF3 282 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 TAPT1Q6NXT6 567 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 OTUD7AQ8TE49 926 aaPredicted RBP10.82□□□□□ -0.68
HDDC3-204ENST00000559834 MORC4Q8TE76 937 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 SLC28A3Q9HAS3 691 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 INCENPQ9NQS7 918 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 GPHNQ9NQX3 736 aaPredicted RBP10.82□□□□□ -0.68
HDDC3-204ENST00000559834 PDGFCQ9NRA1 345 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 ASTN1O14525 1302 aa10.82□□□□□ -0.68
HDDC3-204ENST00000559834 GRXCR1A8MXD5 290 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 PBX2P40425 430 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 BAATQ14032 418 aaPredicted RBP10.81□□□□□ -0.68
HDDC3-204ENST00000559834 DUSP28Q4G0W2 176 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 MCMDC2Q4G0Z9 681 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 TJAP1Q5JTD0 557 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 AKNAD1Q5T1N1 836 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 SYDE2Q5VT97 1194 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 BTNL9Q6UXG8 535 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 FBXO16Q8IX29 292 aaPredicted RBP10.81□□□□□ -0.68
HDDC3-204ENST00000559834 TTC14Q96N46 770 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 WDR11Q9BZH6 1224 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 RANBP17Q9H2T7 1088 aaKnown RBP10.81□□□□□ -0.68
HDDC3-204ENST00000559834 TCP11L1Q9NUJ3 509 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 POLR3EQ9NVU0 708 aa10.81□□□□□ -0.68
HDDC3-204ENST00000559834 MCM3APO60318 1980 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 PTPDC1A2A3K4 754 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 NKRFO15226 690 aaKnown RBP eCLIP10.8□□□□□ -0.68
HDDC3-204ENST00000559834 B4GALT4O60513 344 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 KPNA6O60684 536 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 FGAP02671 866 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 PCP11498 1178 aaKnown RBP10.8□□□□□ -0.68
HDDC3-204ENST00000559834 SLC16A2P36021 539 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 CPT1AP50416 773 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 CCL23P55773 120 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 RRP12Q5JTH9 1297 aaKnown RBP10.8□□□□□ -0.68
HDDC3-204ENST00000559834 TTBK2Q6IQ55 1244 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 OTOP2Q7RTS6 562 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 ATXN2LQ8WWM7 1075 aaKnown RBP10.8□□□□□ -0.68
HDDC3-204ENST00000559834 PPM1EQ8WY54 764 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 TMEM47Q9BQJ4 181 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 NOC4LQ9BVI4 516 aaKnown RBP10.8□□□□□ -0.68
HDDC3-204ENST00000559834 TRPV6Q9H1D0 765 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 PRDM12Q9H4Q4 367 aa10.8□□□□□ -0.68
HDDC3-204ENST00000559834 GPCPD1Q9NPB8 672 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms