RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FKTNO75072 461 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 ALAS1P13196 640 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 SCG2P13521 617 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 SLC4A3P48751 1232 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 FUT2Q10981 343 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 TRIM29Q14134 588 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 PFKFB3Q16875 520 aaPredicted RBP10.65□□□□□ -0.7
LDLR-210ENST00000559340 NBPF11Q86T75 865 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 NCAPG2Q86XI2 1143 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 CMTR1Q8N1G2 835 aaKnown RBP10.65□□□□□ -0.7
LDLR-210ENST00000559340 REPS2Q8NFH8 660 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 CCDC148Q8NFR7 591 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 PIBF1Q8WXW3 757 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 INTS4Q96HW7 963 aaKnown RBP10.65□□□□□ -0.7
LDLR-210ENST00000559340 TRERF1Q96PN7 1200 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 CPVLQ9H3G5 476 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 SH3GLB2Q9NR46 395 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 SLC5A4Q9NY91 659 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 MAP3K20Q9NYL2 800 aaKnown RBP10.65□□□□□ -0.7
LDLR-210ENST00000559340 BTBD7Q9P203 1132 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 ZNF214Q9UL59 606 aaPredicted RBP10.65□□□□□ -0.7
LDLR-210ENST00000559340 SMC3Q9UQE7 1217 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 PCDHA1Q9Y5I3 950 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 PLXNB2O15031 1838 aa10.65□□□□□ -0.71
LDLR-210ENST00000559340 PLXNA1Q9UIW2 1896 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 CNMDO75829 334 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 LARGE1O95461 756 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 GNRH1P01148 92 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 PDIA4P13667 645 aaKnown RBP10.64□□□□□ -0.71
LDLR-210ENST00000559340 MRPL12P52815 198 aaKnown RBP10.64□□□□□ -0.71
LDLR-210ENST00000559340 FCGRTP55899 365 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 CUL4AQ13619 759 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 Q3C1V9 767 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 USH1GQ495M9 461 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 WDR78Q5VTH9 848 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 MCTP2Q6DN12 878 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 PPP1R18Q6NYC8 613 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 RGS22Q8NE09 1264 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 NSUN7Q8NE18 718 aaKnown RBP10.64□□□□□ -0.71
LDLR-210ENST00000559340 CUL5Q93034 780 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 PHKBQ93100 1093 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 COA7Q96BR5 231 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 AGBL1Q96MI9 1066 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 MOV10L1Q9BXT6 1211 aaKnown RBP10.64□□□□□ -0.71
LDLR-210ENST00000559340 ACAD9Q9H845 621 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 TXNRD2Q9NNW7 524 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 RNF146Q9NTX7 359 aa10.64□□□□□ -0.71
LDLR-210ENST00000559340 RBBP6Q7Z6E9 1792 aaKnown RBP10.64□□□□□ -0.71
LDLR-210ENST00000559340 PFASO15067 1338 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 ZNF536O15090 1300 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 PTPDC1A2A3K4 754 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 B4DLN1 442 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 CD2BP2O95400 341 aaKnown RBP10.63□□□□□ -0.71
LDLR-210ENST00000559340 FCER1AP12319 257 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 ERCC3P19447 782 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 PDCP20941 246 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 CALML3P27482 149 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 GNA11P29992 359 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 NAPAP54920 295 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 SNAP25P60880 206 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 KCTD2Q14681 263 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 GALNT17Q6IS24 598 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 HEATR3Q7Z4Q2 680 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 PLEKHH3Q7Z736 793 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 ABRAQ8N0Z2 381 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 SMARCC2Q8TAQ2 1214 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 BICD2Q8TD16 824 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 DDX11Q96FC9 970 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 C6orf50Q9HD87 102 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 BARHL2Q9NY43 387 aa10.63□□□□□ -0.71
LDLR-210ENST00000559340 SLC15A5A6NIM6 579 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 TNPO2O14787 897 aaKnown RBP10.62□□□□□ -0.71
LDLR-210ENST00000559340 CTDNEP1O95476 244 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 PSMC4P43686 418 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 PRMT2P55345 433 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 LACTBP83111 547 aaPredicted RBP10.62□□□□□ -0.71
LDLR-210ENST00000559340 SAFBQ15424 915 aaKnown RBP eCLIP10.62□□□□□ -0.71
LDLR-210ENST00000559340 SLC35G1Q2M3R5 365 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.62□□□□□ -0.71
LDLR-210ENST00000559340 ANKRD35Q8N283 1001 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 MMP19Q99542 508 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 MPHOSPH6Q99547 160 aaKnown RBP10.62□□□□□ -0.71
LDLR-210ENST00000559340 ALG1Q9BT22 464 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 PSTPIP2Q9H939 334 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 EHMT1Q9H9B1 1298 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 BRMS1Q9HCU9 246 aa10.62□□□□□ -0.71
LDLR-210ENST00000559340 hCG_1642624A0A1W2PR95 340 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 ESYT2A0FGR8 921 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 SMCO2A6NFE2 343 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 GCOM1H8Y6P7 765 aaPredicted RBP10.61□□□□□ -0.71
LDLR-210ENST00000559340 POLR2MP0CAP2 368 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 PTPREP23469 700 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 ADCY7P51828 1080 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 NLRP5P59047 1200 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 PKN1Q16512 942 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 RNF207Q6ZRF8 634 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 GPR142Q7Z601 462 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 SOCS4Q8WXH5 440 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 C8orf76Q96K31 380 aa10.61□□□□□ -0.71
LDLR-210ENST00000559340 NUDT12Q9BQG2 462 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms