RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 ZSWIM4Q9H7M6 989 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 AS3MTQ9HBK9 375 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 GPBP1L1Q9HC44 474 aaPredicted RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 ZNF180Q9UJW8 692 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 FAM184BQ9ULE4 1060 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 TTC7AQ9ULT0 858 aaPredicted RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 EMILIN1Q9Y6C2 1016 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 ASXL1Q8IXJ9 1541 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 CEP152O94986 1710 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 SPHKAPQ2M3C7 1700 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 STX10O60499 249 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 ACADSP16219 412 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 MSLNQ13421 630 aaPredicted RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 ATL3Q6DD88 541 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 ARHGAP27Q6ZUM4 889 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 LENG1Q96BZ8 264 aaPredicted RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 HIC2Q96JB3 615 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 TUBGCP5Q96RT8 1024 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 SRPK1Q96SB4 655 aaKnown RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 BCL2L13Q9BXK5 485 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 ATAD3AQ9NVI7 634 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 KDM6AO15550 1401 aaPredicted RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 ARAP3Q8WWN8 1544 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 A0A0J9YVX5 310 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 CYP4A11Q02928 519 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 SEPT7Q16181 437 aaKnown RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 CCDC14Q49A88 953 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 ANKRD13DQ6ZTN6 518 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 C3orf67Q6ZVT6 689 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 TMEM139Q8IV31 216 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 TMCO5AQ8N6Q1 288 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 VMP1Q96GC9 406 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 EPSTI1Q96J88 318 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 SELENOOQ9BVL4 669 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 RTFDC1Q9BY42 306 aaPredicted RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 FTOQ9C0B1 505 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP3-211ENST00000559257 SCHIP1Q9P0W5 487 aaPredicted RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 SCOCQ9UIL1 159 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 BTBD19C9JJ37 291 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 HNRNPRO43390 633 aaKnown RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 ASLP04424 464 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 IFIT2P09913 472 aaKnown RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 MYBL1P10243 752 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 CCNCP24863 283 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 ERCC5P28715 1186 aaPredicted RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 MDH1P40925 334 aaKnown RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 LRP8Q14114 963 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 WTAPQ15007 396 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 SPRED3Q2MJR0 410 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 PDCD4Q53EL6 469 aaKnown RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 GLE1Q53GS7 698 aaKnown RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 GKAP1Q5VSY0 366 aaPredicted RBP9.31□□□□□ -0.92
USP3-211ENST00000559257 RNF220Q5VTB9 566 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 RUFY4Q6ZNE9 571 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 CABP7Q86V35 215 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 PPFIBP1Q86W92 1011 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 PLPP6Q8IY26 295 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 CACNA2D3Q8IZS8 1091 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 TMEM57Q8N5G2 664 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 CCDC110Q8TBZ0 833 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 PARVGQ9HBI0 331 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 CHPF2Q9P2E5 772 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 PDP2Q9P2J9 529 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 CFAP45Q9UL16 551 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 SLC12A4Q9UP95 1085 aa9.31□□□□□ -0.92
USP3-211ENST00000559257 MADDQ8WXG6 1647 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 CTAGE9A4FU28 777 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 VPS37CA5D8V6 355 aaPredicted RBP9.3□□□□□ -0.92
USP3-211ENST00000559257 PARNO95453 639 aaKnown RBP9.3□□□□□ -0.92
USP3-211ENST00000559257 CPA3P15088 417 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 POLR2EP19388 210 aaKnown RBP9.3□□□□□ -0.92
USP3-211ENST00000559257 HALP42357 657 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 PDE6CP51160 858 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 MAP3K12Q12852 859 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 ADRM1Q16186 407 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 DAB2IPQ5VWQ8 1189 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 DUS1LQ6P1R4 473 aaKnown RBP9.3□□□□□ -0.92
USP3-211ENST00000559257 C14orf80Q86SX3 495 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 SCUBE1Q8IWY4 988 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 RASEFQ8IZ41 740 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 LSMEM2Q8N112 164 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 CFAP61Q8NHU2 1237 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP3-211ENST00000559257 CASP10Q92851 521 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 ITPKCQ96DU7 683 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 RPS6KC1Q96S38 1066 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 PARVBQ9HBI1 364 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 PFDN4Q9NQP4 134 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 CCDC87Q9NVE4 849 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 SEPT10Q9P0V9 454 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 IFNKQ9P0W0 207 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 CHMP2BQ9UQN3 213 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 FAM32AQ9Y421 112 aaKnown RBP9.3□□□□□ -0.92
USP3-211ENST00000559257 TRPM2O94759 1503 aa9.3□□□□□ -0.92
USP3-211ENST00000559257 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP3-211ENST00000559257 ITGA2BP08514 1039 aa9.29□□□□□ -0.92
USP3-211ENST00000559257 GSTT2P0CG29 244 aa9.29□□□□□ -0.92
USP3-211ENST00000559257 GSTT2BP0CG30 244 aa9.29□□□□□ -0.92
USP3-211ENST00000559257 HNRNPMP52272 730 aaKnown RBP eCLIP9.29□□□□□ -0.923e-6■■□□□ 12.1
USP3-211ENST00000559257 HPCAP84074 193 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms