RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 UBA5Q9GZZ9 404 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 CNNM2Q9H8M5 875 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 SYNPO2Q9UMS6 1093 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 RPTORQ8N122 1335 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 TNRC18O15417 2968 aaPredicted RBP11.3□□□□□ -0.6
SPG11-214ENST00000558989 STRNO43815 780 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 DHX16O60231 1041 aaKnown RBP11.3□□□□□ -0.6
SPG11-214ENST00000558989 CDC45O75419 566 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 SGPL1O95470 568 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 PYGBP11216 843 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 GJA8P48165 433 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 IFIT1BQ5T764 474 aaKnown RBP11.3□□□□□ -0.6
SPG11-214ENST00000558989 MFSD14CQ5VZR4 134 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 ANKRD35Q8N283 1001 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 DDX27Q96GQ7 796 aaKnown RBP11.3□□□□□ -0.6
SPG11-214ENST00000558989 TTC14Q96N46 770 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 SENP2Q9HC62 589 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 VAT1LQ9HCJ6 419 aa11.3□□□□□ -0.6
SPG11-214ENST00000558989 CEP290O15078 2479 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 IFIT3O14879 490 aaKnown RBP11.29□□□□□ -0.6
SPG11-214ENST00000558989 TCF3P15923 654 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 NOVP48745 357 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 SYDE2Q5VT97 1194 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 CASC1Q6TDU7 716 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 DGKHQ86XP1 1220 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 NCOA7Q8NI08 942 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 DIS3LQ8TF46 1054 aaKnown RBP11.29□□□□□ -0.6
SPG11-214ENST00000558989 RNF146Q9NTX7 359 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 CCPG1Q9ULG6 757 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 ZNF536O15090 1300 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 LCTP09848 1927 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 ALPK3Q96L96 1907 aa11.29□□□□□ -0.6
SPG11-214ENST00000558989 ZNF543Q08ER8 600 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 COL9A3Q14050 684 aaPredicted RBP11.28□□□□□ -0.6
SPG11-214ENST00000558989 SKIV2LQ15477 1246 aaKnown RBP11.28□□□□□ -0.6
SPG11-214ENST00000558989 TRMT44Q8IYL2 757 aaKnown RBP11.28□□□□□ -0.6
SPG11-214ENST00000558989 MAML3Q96JK9 1138 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 TRERF1Q96PN7 1200 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 PAK6Q9NQU5 681 aaPredicted RBP11.28□□□□□ -0.6
SPG11-214ENST00000558989 GPHNQ9NQX3 736 aaPredicted RBP11.28□□□□□ -0.6
SPG11-214ENST00000558989 SLC5A4Q9NY91 659 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 DDX49Q9Y6V7 483 aaKnown RBP11.28□□□□□ -0.6
SPG11-214ENST00000558989 ERICH2A1L162 156 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 SLC27A2O14975 620 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 FARP2O94887 1054 aaPredicted RBP11.28□□□□□ -0.6
SPG11-214ENST00000558989 USH1GQ495M9 461 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 CCDC178Q5BJE1 867 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 MUM1L1Q5H9M0 696 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 CREB3L3Q68CJ9 461 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 NSMFQ6X4W1 530 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 RAB11FIP4Q86YS3 637 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 TRPV1Q8NER1 839 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 LRRC2Q9BYS8 371 aa11.28□□□□□ -0.6
SPG11-214ENST00000558989 HOXC6P09630 235 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 ANTXR2P58335 489 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 CNTN2Q02246 1040 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 WTAPQ15007 396 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 TMEM67Q5HYA8 995 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 MAP3K21Q5TCX8 1036 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 STAG2Q8N3U4 1231 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 PIBF1Q8WXW3 757 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 MYL10Q9BUA6 226 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 ACAD9Q9H845 621 aa11.27□□□□□ -0.61
SPG11-214ENST00000558989 GNEQ9Y223 722 aaKnown RBP11.27□□□□□ -0.61
SPG11-214ENST00000558989 ANKRD62A6NC57 917 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 ATP2A1O14983 1001 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 PARP1P09874 1014 aaKnown RBP11.26□□□□□ -0.61
SPG11-214ENST00000558989 COPB2P35606 906 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 SEC23AQ15436 765 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 MB21D2Q8IYB1 491 aaPredicted RBP11.26□□□□□ -0.61
SPG11-214ENST00000558989 ABRAQ8N0Z2 381 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 NUP133Q8WUM0 1156 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 UBXN4Q92575 508 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 DPF3Q92784 378 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 GLMNQ92990 594 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 PAWRQ96IZ0 340 aaKnown RBP11.26□□□□□ -0.61
SPG11-214ENST00000558989 TCEANC2Q96MN5 208 aa11.26□□□□□ -0.61
SPG11-214ENST00000558989 PURBQ96QR8 312 aaKnown RBP11.26□□□□□ -0.61
SPG11-214ENST00000558989 RANBP17Q9H2T7 1088 aaKnown RBP11.26□□□□□ -0.61
SPG11-214ENST00000558989 PRC1O43663 620 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 PLA2G6O60733 806 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 SNHG28P0DPA3 235 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 OAZ1P54368 228 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 SART3Q15020 963 aaKnown RBP11.25□□□□□ -0.61
SPG11-214ENST00000558989 ZNF792Q3KQV3 632 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 ADGRF4Q8IZF3 695 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 BANK1Q8NDB2 785 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 CHST13Q8NET6 341 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 LENG1Q96BZ8 264 aaPredicted RBP11.25□□□□□ -0.61
SPG11-214ENST00000558989 TINF2Q9BSI4 451 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 CRISPLD2Q9H0B8 497 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 A1CFQ9NQ94 594 aaKnown RBP11.25□□□□□ -0.61
SPG11-214ENST00000558989 PCDH10Q9P2E7 1040 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 FBXO40Q9UH90 709 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 PTPDC1A2A3K4 754 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 POTEB2H3BUK9 544 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 NFIBO00712 420 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 ICAM1P05362 532 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 FDX1P10109 184 aa11.25□□□□□ -0.61
SPG11-214ENST00000558989 CYBAP13498 195 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms