RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SNRNP48Q6IEG0 339 aaKnown RBP11.08□□□□□ -0.64
CUX1-216ENST00000558469 GTF3C2Q8WUA4 911 aaPredicted RBP11.08□□□□□ -0.64
CUX1-216ENST00000558469 ZFYVE28Q9HCC9 887 aa11.08□□□□□ -0.64
CUX1-216ENST00000558469 CWC22Q9HCG8 908 aaKnown RBP11.08□□□□□ -0.64
CUX1-216ENST00000558469 TXNRD2Q9NNW7 524 aa11.08□□□□□ -0.64
CUX1-216ENST00000558469 GJB4Q9NTQ9 266 aa11.08□□□□□ -0.64
CUX1-216ENST00000558469 BARHL2Q9NY43 387 aa11.08□□□□□ -0.64
CUX1-216ENST00000558469 VPS54Q9P1Q0 977 aa11.08□□□□□ -0.64
CUX1-216ENST00000558469 RBPJLQ9UBG7 517 aa11.08□□□□□ -0.64
CUX1-216ENST00000558469 ZNF214Q9UL59 606 aaPredicted RBP11.08□□□□□ -0.64
CUX1-216ENST00000558469 RABGAP1Q9Y3P9 1069 aa11.08□□□□□ -0.64
CUX1-216ENST00000558469 PLXNA1Q9UIW2 1896 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 hCG_1984214I3L0E3 225 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 ATP2A1O14983 1001 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 ALDH1A1P00352 501 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 ALAS1P13196 640 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 STAT3P40763 770 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 OAZ1P54368 228 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 GUCY1B3Q02153 619 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 TRAF1Q13077 416 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 CRHR2Q13324 411 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 TRIM29Q14134 588 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 Q3C1V9 767 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 ANKRD13CQ8N6S4 541 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 ZNF713Q8N859 430 aaPredicted RBP11.07□□□□□ -0.64
CUX1-216ENST00000558469 C8orf76Q96K31 380 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 TEX13BQ9BXU2 312 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 SPATC1LQ9H0A9 340 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 TSPYL2Q9H2G4 693 aaPredicted RBP11.07□□□□□ -0.64
CUX1-216ENST00000558469 SH3GLB2Q9NR46 395 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 HOMER2Q9NSB8 354 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 CPA4Q9UI42 421 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 DOCK3Q8IZD9 2030 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 ABCB11O95342 1321 aa11.07□□□□□ -0.64
CUX1-216ENST00000558469 MYH7BA7E2Y1 1941 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 SMCO2A6NFE2 343 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 CA12O43570 354 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 TLR2O60603 784 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 PDCP20941 246 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 VASPP50552 380 aaPredicted RBP11.06□□□□□ -0.64
CUX1-216ENST00000558469 ERVK-9P63128 1117 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 ERVK-24P63145 666 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 KRT40Q6A162 431 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 TYW1BQ6NUM6 668 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 GPRC5AQ8NFJ5 357 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 CCDC148Q8NFR7 591 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 CCDC12Q8WUD4 166 aaPredicted RBP11.06□□□□□ -0.64
CUX1-216ENST00000558469 SHISA4Q96DD7 197 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 TRERF1Q96PN7 1200 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 PNMA2Q9UL42 364 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 KCNJ14Q9UNX9 436 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 MRPL11Q9Y3B7 192 aaKnown RBP11.06□□□□□ -0.64
CUX1-216ENST00000558469 RIPK3Q9Y572 518 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 ADGRA2Q96PE1 1338 aa11.06□□□□□ -0.64
CUX1-216ENST00000558469 LCTP09848 1927 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 ZSWIM8A7E2V4 1837 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 VPS37CA5D8V6 355 aaPredicted RBP11.05□□□□□ -0.64
CUX1-216ENST00000558469 H3BQV1 296 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 TRPA1O75762 1119 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 SYT1P21579 422 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 NLRP5P59047 1200 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 MUM1L1Q5H9M0 696 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 IFFO2Q5TF58 517 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 PPP1R18Q6NYC8 613 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 NCAPG2Q86XI2 1143 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 RIOX2Q8IUF8 465 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 FBXO18Q8NFZ0 1043 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 PHF20Q9BVI0 1012 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 MOV10L1Q9BXT6 1211 aaKnown RBP11.05□□□□□ -0.64
CUX1-216ENST00000558469 RNF146Q9NTX7 359 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 RNF186Q9NXI6 227 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 MORF4L1Q9UBU8 362 aa11.05□□□□□ -0.64
CUX1-216ENST00000558469 TCHHQ07283 1943 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 OPLAHO14841 1288 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 STX6O43752 255 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 TBC1D8O95759 1140 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 SLC25A27O95847 323 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 MMP1P03956 469 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 BCRP11274 1271 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 ERCC3P19447 782 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 ADCY7P51828 1080 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 CCNA1P78396 465 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 FAM110CQ1W6H9 321 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 TKFCQ3LXA3 575 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 WDR78Q5VTH9 848 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 C17orf99Q6UX52 265 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 CCAR1Q8IX12 1150 aaKnown RBP11.04□□□□□ -0.64
CUX1-216ENST00000558469 CLEC4DQ8WXI8 215 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 CUL5Q93034 780 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 PHF12Q96QT6 1004 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 ZMYND12Q9H0C1 365 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 R3HDMLQ9H3Y0 253 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 PSTPIP2Q9H939 334 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 C6orf50Q9HD87 102 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 RIC8AQ9NPQ8 531 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 PCNTO95613 3336 aa11.04□□□□□ -0.64
CUX1-216ENST00000558469 ESYT2A0FGR8 921 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 NFIBO00712 420 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 ADAMTS3O15072 1205 aa11.03□□□□□ -0.64
CUX1-216ENST00000558469 CFBP00751 764 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms