RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 CWC27Q6UX04 472 aaKnown RBP11.92□□□□□ -0.5
USP3-207ENST00000558218 BTNL9Q6UXG8 535 aa11.92□□□□□ -0.5
USP3-207ENST00000558218 DGKHQ86XP1 1220 aa11.92□□□□□ -0.5
USP3-207ENST00000558218 CPXCR1Q8N123 301 aa11.92□□□□□ -0.5
USP3-207ENST00000558218 TRPV1Q8NER1 839 aa11.92□□□□□ -0.5
USP3-207ENST00000558218 ESR2Q92731 530 aa11.92□□□□□ -0.5
USP3-207ENST00000558218 SYNGAP1Q96PV0 1343 aa11.91□□□□□ -0.5
USP3-207ENST00000558218 PGK2P07205 417 aa11.91□□□□□ -0.5
USP3-207ENST00000558218 BMP8BP34820 402 aa11.91□□□□□ -0.5
USP3-207ENST00000558218 ANKS1AQ92625 1134 aa11.91□□□□□ -0.5
USP3-207ENST00000558218 PRO3102Q9H379 93 aa11.91□□□□□ -0.5
USP3-207ENST00000558218 RAVER2Q9HCJ3 691 aaKnown RBP11.91□□□□□ -0.5
USP3-207ENST00000558218 TOMM22Q9NS69 142 aa11.91□□□□□ -0.5
USP3-207ENST00000558218 CNPY2Q9Y2B0 182 aa11.91□□□□□ -0.5
USP3-207ENST00000558218 TACC3Q9Y6A5 838 aa11.91□□□□□ -0.5
USP3-207ENST00000558218 PFASO15067 1338 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 NMT2O60551 498 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 MMRN1Q13201 1228 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 IMMTQ16891 758 aaKnown RBP11.9□□□□□ -0.5
USP3-207ENST00000558218 RRP12Q5JTH9 1297 aaKnown RBP11.9□□□□□ -0.5
USP3-207ENST00000558218 TTC22Q5TAA0 569 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 IQCA1Q86XH1 822 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 ANKRD35Q8N283 1001 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 RUFY2Q8WXA3 655 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 TMEM47Q9BQJ4 181 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 MAF1Q9H063 256 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 ACAD9Q9H845 621 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 PRR12Q9ULL5 1215 aa11.9□□□□□ -0.5
USP3-207ENST00000558218 SMCHD1A6NHR9 2005 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 RAD50Q92878 1312 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 PLXNA1Q9UIW2 1896 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 ZNF865P0CJ78 1059 aaPredicted RBP11.89□□□□□ -0.51
USP3-207ENST00000558218 RARBP10826 455 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 AKR1A1P14550 325 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 HAND2P61296 217 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 IKQ13123 557 aaPredicted RBP11.89□□□□□ -0.51
USP3-207ENST00000558218 E2F4Q16254 413 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 PRAMEF19Q5SWL8 479 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 C1orf53Q5VUE5 145 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 KCTD1Q719H9 257 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 KRT23Q9C075 422 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 SENP6Q9GZR1 1112 aaPredicted RBP11.89□□□□□ -0.51
USP3-207ENST00000558218 ABHD16BQ9H3Z7 469 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 CNNM2Q9H8M5 875 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 FAM184BQ9ULE4 1060 aa11.89□□□□□ -0.51
USP3-207ENST00000558218 ZNF536O15090 1300 aa11.88□□□□□ -0.51
USP3-207ENST00000558218 LOC102724159A0A0B4J2E5 919 aa11.88□□□□□ -0.51
USP3-207ENST00000558218 KBTBD13C9JR72 458 aa11.88□□□□□ -0.51
USP3-207ENST00000558218 SNAI1O95863 264 aaPredicted RBP11.88□□□□□ -0.51
USP3-207ENST00000558218 ICAM1P05362 532 aa11.88□□□□□ -0.51
USP3-207ENST00000558218 SNHG28P0DPA3 235 aa11.88□□□□□ -0.51
USP3-207ENST00000558218 PWP2Q15269 919 aaKnown RBP11.88□□□□□ -0.51
USP3-207ENST00000558218 GPATCH4Q5T3I0 446 aaKnown RBP11.88□□□□□ -0.51
USP3-207ENST00000558218 RNF180Q86T96 592 aa11.88□□□□□ -0.51
USP3-207ENST00000558218 TRERF1Q96PN7 1200 aa11.88□□□□□ -0.51
USP3-207ENST00000558218 GDF15Q99988 308 aa11.88□□□□□ -0.51
USP3-207ENST00000558218 TSEN34Q9BSV6 310 aaKnown RBP11.88□□□□□ -0.51
USP3-207ENST00000558218 RANBP17Q9H2T7 1088 aaKnown RBP11.88□□□□□ -0.51
USP3-207ENST00000558218 RBM27Q9P2N5 1060 aaKnown RBP11.88□□□□□ -0.51
USP3-207ENST00000558218 ISY1Q9ULR0 285 aaKnown RBP11.88□□□□□ -0.51
USP3-207ENST00000558218 ASB14A6NK59 587 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 DUSP11O75319 330 aaKnown RBP11.87□□□□□ -0.51
USP3-207ENST00000558218 PDHBP11177 359 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 SLC4A3P48751 1232 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 FXR1P51114 621 aaKnown RBP eCLIP11.87□□□□□ -0.51
USP3-207ENST00000558218 LRRC41Q15345 812 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 LRRC26Q2I0M4 334 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 GJC2Q5T442 439 aaPredicted RBP11.87□□□□□ -0.51
USP3-207ENST00000558218 DMRTA1Q5VZB9 504 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 TBC1D10CQ8IV04 446 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 C7orf61Q8IZ16 206 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 FAM133AQ8N9E0 248 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 AGBL1Q96MI9 1066 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 KCNK17Q96T54 332 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 XPNPEP3Q9NQH7 507 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 RNF146Q9NTX7 359 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 ZSWIM5Q9P217 1185 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 FRMPD3Q5JV73 1810 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 ALPK3Q96L96 1907 aa11.87□□□□□ -0.51
USP3-207ENST00000558218 GSPT1P15170 499 aaKnown RBP11.86□□□□□ -0.51
USP3-207ENST00000558218 CHMLP26374 656 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 FOSBP53539 338 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 NKX3-2P78367 333 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 LSM11P83369 360 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP3-207ENST00000558218 ZNF543Q08ER8 600 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 ACVR2BQ13705 512 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 SNX17Q15036 470 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 CCDC96Q2M329 555 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 SYDE2Q5VT97 1194 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 SLC39A5Q6ZMH5 540 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 ZSCAN10Q96SZ4 725 aaPredicted RBP11.86□□□□□ -0.51
USP3-207ENST00000558218 A1CFQ9NQ94 594 aaKnown RBP11.86□□□□□ -0.51
USP3-207ENST00000558218 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.86□□□□□ -0.51
USP3-207ENST00000558218 CCPG1Q9ULG6 757 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 PHF24Q9UPV7 400 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 WDR19Q8NEZ3 1342 aa11.86□□□□□ -0.51
USP3-207ENST00000558218 KDM4AO75164 1064 aa11.85□□□□□ -0.51
USP3-207ENST00000558218 ALAS1P13196 640 aa11.85□□□□□ -0.51
USP3-207ENST00000558218 TAL1P17542 331 aaPredicted RBP11.85□□□□□ -0.51
USP3-207ENST00000558218 TTBK2Q6IQ55 1244 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms