RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 SLC12A7Q9Y666 1083 aa12.44□□□□□ -0.42
LINC00239-201ENST00000556973 POTEB2H3BUK9 544 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 CCND3P30281 292 aaPredicted RBP12.43□□□□□ -0.42
LINC00239-201ENST00000556973 GNAQP50148 359 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 TRAF1Q13077 416 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 BLOC1S2Q6QNY1 142 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 MAMDC4Q6UXC1 1216 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 FBXO11Q86XK2 927 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 RGS22Q8NE09 1264 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 MTMR8Q96EF0 704 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 JAKMIP1Q96N16 626 aaKnown RBP12.43□□□□□ -0.42
LINC00239-201ENST00000556973 LZTS2Q9BRK4 669 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 LRRC2Q9BYS8 371 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 CRISPLD2Q9H0B8 497 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 NRBP1Q9UHY1 535 aa12.43□□□□□ -0.42
LINC00239-201ENST00000556973 ABCB11O95342 1321 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 ZBTB5O15062 677 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 MSCO60682 206 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 CNGA1P29973 690 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 FGD1P98174 961 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 QRICH1Q2TAL8 776 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 USH1GQ495M9 461 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 NSMFQ6X4W1 530 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 FBXL16Q8N461 479 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 FAM133AQ8N9E0 248 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 FANCBQ8NB91 859 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 CLEC4DQ8WXI8 215 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 MYL10Q9BUA6 226 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 AMNQ9BXJ7 453 aa12.42□□□□□ -0.42
LINC00239-201ENST00000556973 SYNGAP1Q96PV0 1343 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 NFIBO00712 420 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 CYTH3O43739 400 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 CYBAP13498 195 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 RPS6KB1P23443 525 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 CNTN2Q02246 1040 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 BAATQ14032 418 aaPredicted RBP12.41□□□□□ -0.42
LINC00239-201ENST00000556973 PRAMEF19Q5SWL8 479 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 LHX8Q68G74 356 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 RNF207Q6ZRF8 634 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 RUFY3Q7L099 469 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 MCF2L2Q86YR7 1114 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 ANKLE1Q8NAG6 615 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 TRPV1Q8NER1 839 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 TCEANC2Q96MN5 208 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 TM6SF1Q9BZW5 370 aa12.41□□□□□ -0.42
LINC00239-201ENST00000556973 DDX20Q9UHI6 824 aaKnown RBP12.41□□□□□ -0.42
LINC00239-201ENST00000556973 MRPL11Q9Y3B7 192 aaKnown RBP12.41□□□□□ -0.42
LINC00239-201ENST00000556973 BRCA2P51587 3418 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 FRMPD3Q5JV73 1810 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 LOC102724159A0A0B4J2E5 919 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 PNMA6FA0A0J9YX94 578 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 PTPDC1A2A3K4 754 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 SOWAHBA6NEL2 793 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 ASB14A6NK59 587 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 SEPT4O43236 478 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 ZBTB43O43298 467 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 SNAI1O95863 264 aaPredicted RBP12.4□□□□□ -0.42
LINC00239-201ENST00000556973 CPA1P15085 419 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 TAL1P17542 331 aaPredicted RBP12.4□□□□□ -0.42
LINC00239-201ENST00000556973 CASTP20810 708 aaKnown RBP12.4□□□□□ -0.42
LINC00239-201ENST00000556973 PWP2Q15269 919 aaKnown RBP12.4□□□□□ -0.42
LINC00239-201ENST00000556973 APOA5Q6Q788 366 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 Q6ZUG5 572 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 HOMER1Q86YM7 354 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 SAMD3Q8N6K7 520 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 SHISA4Q96DD7 197 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 PIGSQ96S52 555 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 SPZ1Q9BXG8 430 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 ZSWIM6Q9HCJ5 1215 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 RBM28Q9NW13 759 aaKnown RBP12.4□□□□□ -0.42
LINC00239-201ENST00000556973 MAP3K20Q9NYL2 800 aaKnown RBP12.4□□□□□ -0.42
LINC00239-201ENST00000556973 ADD3Q9UEY8 706 aaKnown RBP12.4□□□□□ -0.42
LINC00239-201ENST00000556973 OGDHLQ9ULD0 1010 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 BRPF3Q9ULD4 1205 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 CNPY2Q9Y2B0 182 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 CYP46A1Q9Y6A2 500 aa12.4□□□□□ -0.42
LINC00239-201ENST00000556973 LCTP09848 1927 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 KLF18A0A0U1RQI7 1052 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 ZNF865P0CJ78 1059 aaPredicted RBP12.39□□□□□ -0.43
LINC00239-201ENST00000556973 RXRAP19793 462 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 RCAN1P53805 252 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 ANAPC15P60006 121 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 PPP2R5BQ15173 497 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 SLC35G1Q2M3R5 365 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 MICU3Q86XE3 530 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 CCDC144CPQ8IYA2 1237 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 SRBD1Q8N5C6 995 aaKnown RBP12.39□□□□□ -0.43
LINC00239-201ENST00000556973 DNERQ8NFT8 737 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 RRP36Q96EU6 259 aaKnown RBP12.39□□□□□ -0.43
LINC00239-201ENST00000556973 FGD4Q96M96 766 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 AGXT2Q9BYV1 514 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 ABHD16BQ9H3Z7 469 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.39□□□□□ -0.43
LINC00239-201ENST00000556973 PCDHA1Q9Y5I3 950 aa12.39□□□□□ -0.43
LINC00239-201ENST00000556973 B4DLN1 442 aa12.38□□□□□ -0.43
LINC00239-201ENST00000556973 PPP1R11O60927 126 aaPredicted RBP12.38□□□□□ -0.43
LINC00239-201ENST00000556973 CALML3P27482 149 aa12.38□□□□□ -0.43
LINC00239-201ENST00000556973 MRPL12P52815 198 aaKnown RBP12.38□□□□□ -0.43
LINC00239-201ENST00000556973 RPS6P62753 249 aaKnown RBP12.38□□□□□ -0.43
LINC00239-201ENST00000556973 ACVR2BQ13705 512 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms