RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 NFX1Q12986 1120 aaKnown RBP6.97□□□□□ -1.29
TDP1-215ENST00000556498 TUBA3CQ13748 450 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 RASA2Q15283 850 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 INAQ16352 499 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 Q4G0T1 1027 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 CCDC38Q502W7 563 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 ZNF468Q5VIY5 522 aaPredicted RBP6.97□□□□□ -1.29
TDP1-215ENST00000556498 ZCCHC8Q6NZY4 707 aaKnown RBP6.97□□□□□ -1.29
TDP1-215ENST00000556498 CLEC17AQ6ZS10 378 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 ARHGAP22Q7Z5H3 698 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 LURAP1LQ8IV03 231 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 TEX19Q8NA77 164 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 APPL2Q8NEU8 664 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 B4GALNT2Q8NHY0 566 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 SLC16A10Q8TF71 515 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 JARID2Q92833 1246 aaPredicted RBP6.97□□□□□ -1.29
TDP1-215ENST00000556498 KCNN1Q92952 543 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 UROC1Q96N76 676 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 SETDB2Q96T68 719 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 TRIM4Q9C037 500 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 TNMDQ9H2S6 317 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 ANTXR1Q9H6X2 564 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 CFDP1Q9UEE9 299 aaPredicted RBP6.97□□□□□ -1.29
TDP1-215ENST00000556498 MRPL11Q9Y3B7 192 aaKnown RBP6.97□□□□□ -1.29
TDP1-215ENST00000556498 COL4A3BPQ9Y5P4 624 aa6.97□□□□□ -1.29
TDP1-215ENST00000556498 CCDC163A0A0D9SF12 145 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 IFRD1O00458 451 aaPredicted RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 EREGO14944 169 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 MGEA5O60502 916 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 ZNF189O75820 626 aaPredicted RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 LDHAP00338 332 aaKnown RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 FESP07332 822 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 PSAPP07602 524 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 CD9P21926 228 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 CA8P35219 290 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 SOX18P35713 384 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 GCLCP48506 637 aaPredicted RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 FNTAP49354 379 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 CCNHP51946 323 aaPredicted RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 MRPL28Q13084 256 aaKnown RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 PPP2R5BQ15173 497 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 CCDC57Q2TAC2 916 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 EMC10Q5UCC4 262 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 NUGGCQ68CJ6 796 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 PDXDC1Q6P996 788 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 OLFML1Q6UWY5 402 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 ATF7IPQ6VMQ6 1270 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 BEND5Q7L4P6 421 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 SYT9Q86SS6 491 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 FBF1Q8TES7 1133 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 WHAMMQ8TF30 809 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 ZFAND2BQ8WV99 257 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 PPP2R3CQ969Q6 453 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 CCDC74AQ96AQ1 378 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 SRRTQ9BXP5 876 aaKnown RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 VPS33BQ9H267 617 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 EPB41L4AQ9HCS5 686 aaPredicted RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 AVENQ9NQS1 362 aaPredicted RBP6.96□□□□□ -1.3
TDP1-215ENST00000556498 MBIPQ9NS73 344 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 GTF3C4Q9UKN8 822 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 TRAF3IP3Q9Y228 551 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 CARD8Q9Y2G2 431 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 GMEB1Q9Y692 573 aa6.96□□□□□ -1.3
TDP1-215ENST00000556498 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.96□□□□□ -1.3
TDP1-215ENST00000556498 WRNQ14191 1432 aaPredicted RBP eCLIP6.95□□□□□ -1.3
TDP1-215ENST00000556498 FAM170AA1A519 330 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 H0Y3Z8 333 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 CHUKO15111 745 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 SIN3BO75182 1162 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 PYGLP06737 847 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 TROVE2P10155 538 aaKnown RBP eCLIP6.95□□□□□ -1.3
TDP1-215ENST00000556498 HOXD8P13378 290 aaPredicted RBP6.95□□□□□ -1.3
TDP1-215ENST00000556498 IDEP14735 1019 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 DESP17661 470 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 RANBP1P43487 201 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 TRAPPC10P48553 1259 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 UBXN2AP68543 259 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 PLAURQ03405 335 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 MAP7Q14244 749 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 PTPN14Q15678 1187 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 VPS72Q15906 364 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 USH1GQ495M9 461 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 CCDC14Q49A88 953 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 RNFT1Q5M7Z0 435 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 DHX32Q7L7V1 743 aaKnown RBP6.95□□□□□ -1.3
TDP1-215ENST00000556498 GALNT12Q8IXK2 581 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 CEP57L1Q8IYX8 460 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 TEX9Q8N6V9 391 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 GSDMBQ8TAX9 411 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 KIAA1524Q8TCG1 905 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 BRSK1Q8TDC3 778 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 TRPC4APQ8TEL6 797 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 CFAP36Q96G28 342 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 MAML3Q96JK9 1138 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 COL25A1Q9BXS0 654 aaPredicted RBP6.95□□□□□ -1.3
TDP1-215ENST00000556498 ZSCAN16Q9H4T2 348 aaPredicted RBP6.95□□□□□ -1.3
TDP1-215ENST00000556498 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.95□□□□□ -1.3
TDP1-215ENST00000556498 PARP2Q9UGN5 583 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 SALL4Q9UJQ4 1053 aa6.95□□□□□ -1.3
TDP1-215ENST00000556498 FBXO2Q9UK22 296 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms