RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	TSPYL6	Q8N831	410 aa		5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	STK35	Q8TDR2	534 aa		5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	TP53INP1	Q96A56	240 aa		5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	CRELD1	Q96HD1	420 aa		5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	UBL7	Q96S82	380 aa	Predicted RBP	5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	MYH16	Q9H6N6	1097 aa		5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	PHAX	Q9H814	394 aa	Known RBP	5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	DDX21	Q9NR30	783 aa	Known RBP eCLIP	5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	TPSG1	Q9NRR2	321 aa		5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	HYPK	Q9NX55	129 aa		5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	DBF4	Q9UBU7	674 aa	Predicted RBP	5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	LAMB2	P55268	1798 aa		5.93	□□□□□ -1.46
ATXN3-238	ENST00000556288	SLX4	Q8IY92	1834 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	ARFGEF1	Q9Y6D6	1849 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	BRCA1	P38398	1863 aa	Known RBP	5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	POLRMT	O00411	1230 aa	Known RBP	5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	ZNF853	P0CG23	659 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	DRD2	P14416	443 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	NBPF11	Q86T75	865 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	CNBD1	Q8NA66	436 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	SMG8	Q8ND04	991 aa	Known RBP	5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	JARID2	Q92833	1246 aa	Predicted RBP	5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	SSBP4	Q9BWG4	385 aa	Predicted RBP	5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	CHMP4A	Q9BY43	222 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	CCDC86	Q9H6F5	360 aa	Known RBP	5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	SUGCT	Q9HAC7	445 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	PIM2	Q9P1W9	311 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	MAP3K15	Q6ZN16	1313 aa		5.92	□□□□□ -1.46
ATXN3-238	ENST00000556288	SCN7A	Q01118	1682 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	ERVV-1	B6SEH8	477 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	GRIN3B	O60391	1043 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	DDX58	O95786	925 aa	Known RBP	5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	SLFN14	P0C7P3	912 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	LIG1	P18858	919 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	BMP6	P22004	513 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	YY1	P25490	414 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	PDE6B	P35913	854 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	ST13	P50502	369 aa	Known RBP	5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	TGFB2	P61812	414 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	MRPL58	Q14197	206 aa	Known RBP	5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	LRRC14	Q15048	493 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	MAP3K11	Q16584	847 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	DALRD3	Q5D0E6	543 aa	Known RBP	5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	PCNX4	Q63HM2	1172 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	MAP1S	Q66K74	1059 aa	Predicted RBP	5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	CLEC4G	Q6UXB4	293 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	PPP1R42	Q7Z4L9	355 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	PDZD3	Q86UT5	571 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	GRIN3A	Q8TCU5	1115 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	UTP4	Q969X6	686 aa	Known RBP	5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	MYD88	Q99836	296 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	NYX	Q9GZU5	481 aa		5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	TRMT112	Q9UI30	125 aa	Known RBP	5.91	□□□□□ -1.46
ATXN3-238	ENST00000556288	DICER1	Q9UPY3	1922 aa	Known RBP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	GAS2	O43903	313 aa	Known RBP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	AOC2	O75106	756 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	VAMP4	O75379	141 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	YBX3	P16989	372 aa	Known RBP eCLIP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	PREP	P48147	710 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	SOX4	Q06945	474 aa	Predicted RBP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	TCIRG1	Q13488	830 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	HSP90AB3P	Q58FF7	597 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	NKAPL	Q5M9Q1	402 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	RASIP1	Q5U651	963 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	SUSD4	Q5VX71	490 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	TTBK2	Q6IQ55	1244 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	PRR5L	Q6MZQ0	368 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	LLGL2	Q6P1M3	1020 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	PLBD2	Q8NHP8	589 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	RPGR	Q92834	1020 aa	Known RBP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	WDR89	Q96FK6	387 aa	Predicted RBP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	FAM46A	Q96IP4	442 aa	Known RBP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	YTHDC1	Q96MU7	727 aa	Known RBP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	UTP14A	Q9BVJ6	771 aa	Known RBP	5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	KRT82	Q9NSB4	513 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	CYP8B1	Q9UNU6	501 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	MAP3K2	Q9Y2U5	619 aa		5.9	□□□□□ -1.46
ATXN3-238	ENST00000556288	IL16	Q14005	1332 aa		5.9	□□□□□ -1.47
ATXN3-238	ENST00000556288	FANCI	Q9NVI1	1328 aa		5.9	□□□□□ -1.47
ATXN3-238	ENST00000556288	CARMIL3	Q8ND23	1372 aa		5.9	□□□□□ -1.47
ATXN3-238	ENST00000556288	DLEC1	Q9Y238	1755 aa		5.9	□□□□□ -1.47
ATXN3-238	ENST00000556288	NRXN2	Q9P2S2	1712 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288		E9PSI1	815 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	ZNF862	O60290	1169 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	TIAF1	O95411	115 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	HOXB7	P09629	217 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	HCLS1	P14317	486 aa	Predicted RBP	5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	LMNB1	P20700	586 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	USP11	P51784	963 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	ZNF252P-AS1	Q0IIN9	211 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	NEXN	Q0ZGT2	675 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	SLC4A10	Q6U841	1118 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	G2E3	Q7L622	706 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	DYM	Q7RTS9	669 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	ZNF34	Q8IZ26	560 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	SYNE4	Q8N205	404 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	ARMC10	Q8N2F6	343 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	TTLL6	Q8N841	843 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	TMEM87A	Q8NBN3	555 aa		5.89	□□□□□ -1.47
ATXN3-238	ENST00000556288	ZNF526	Q8TF50	670 aa	Predicted RBP	5.89	□□□□□ -1.47

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