RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 OTOP1Q7RTM1 612 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 FBXO11Q86XK2 927 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 ABRAQ8N0Z2 381 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 SMARCC2Q8TAQ2 1214 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 AGBL1Q96MI9 1066 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 MMP19Q99542 508 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 NUDT12Q9BQG2 462 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 AMNQ9BXJ7 453 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 RIOX1Q9H6W3 641 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 RNF146Q9NTX7 359 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 RBM27Q9P2N5 1060 aaKnown RBP12.61□□□□□ -0.39
SHMT2-218ENST00000555213 SRRDQ9UH36 339 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 CIZ1Q9ULV3 898 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-218ENST00000555213 ZNF536O15090 1300 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 ABCB11O95342 1321 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 PNMA6FA0A0J9YX94 578 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 SLC15A5A6NIM6 579 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 FDPSP14324 419 aaKnown RBP12.6□□□□□ -0.39
SHMT2-218ENST00000555213 RGS2P41220 211 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 CCT2P78371 535 aaKnown RBP12.6□□□□□ -0.39
SHMT2-218ENST00000555213 AKAP17AQ02040 695 aaKnown RBP12.6□□□□□ -0.39
SHMT2-218ENST00000555213 PRKCZQ05513 592 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 USH1GQ495M9 461 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 TRIM22Q8IYM9 498 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 RAET1EQ8TD07 263 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 ABHD8Q96I13 439 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 TRERF1Q96PN7 1200 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 PIGSQ96S52 555 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 NCOA5Q9HCD5 579 aaKnown RBP12.6□□□□□ -0.39
SHMT2-218ENST00000555213 PFASO15067 1338 aa12.6□□□□□ -0.39
SHMT2-218ENST00000555213 CYTH3O43739 400 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 JAK2O60674 1132 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 PTPREP23469 700 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 CTGFP29279 349 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 CDC27P30260 824 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 GRB14Q14449 540 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 NTRK3Q16288 839 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 NBPF11Q86T75 865 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 MCF2L2Q86YR7 1114 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 CMTR1Q8N1G2 835 aaKnown RBP12.59□□□□□ -0.39
SHMT2-218ENST00000555213 ANKRD35Q8N283 1001 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 CCDC82Q8N4S0 544 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 SRBD1Q8N5C6 995 aaKnown RBP12.59□□□□□ -0.39
SHMT2-218ENST00000555213 NSUN7Q8NE18 718 aaKnown RBP12.59□□□□□ -0.39
SHMT2-218ENST00000555213 PIBF1Q8WXW3 757 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 MTMR8Q96EF0 704 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 DDX11Q96FC9 970 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 APBA2Q99767 749 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 MRPL11Q9Y3B7 192 aaKnown RBP12.59□□□□□ -0.39
SHMT2-218ENST00000555213 PCDHA1Q9Y5I3 950 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 COL11A1P12107 1806 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-218ENST00000555213 CNTNAP5Q8WYK1 1306 aa12.59□□□□□ -0.39
SHMT2-218ENST00000555213 ZNF236Q9UL36 1845 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 hCG_1984214I3L0E3 225 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 HSP90AA1P07900 732 aaKnown RBP12.58□□□□□ -0.4
SHMT2-218ENST00000555213 GJB2P29033 226 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 ADORA2AP29274 412 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 ADD1P35611 737 aaKnown RBP12.58□□□□□ -0.4
SHMT2-218ENST00000555213 FLT3LGP49771 235 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 MAP2K5Q13163 448 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 IRF5Q13568 498 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 FBXO46Q6PJ61 603 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-218ENST00000555213 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHMT2-218ENST00000555213 DPP9Q86TI2 863 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 TRMT44Q8IYL2 757 aaKnown RBP12.58□□□□□ -0.4
SHMT2-218ENST00000555213 ZNF713Q8N859 430 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-218ENST00000555213 LLPHQ9BRT6 129 aaKnown RBP12.58□□□□□ -0.4
SHMT2-218ENST00000555213 MAF1Q9H063 256 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 RIPK3Q9Y572 518 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-218ENST00000555213 CASP8AP2Q9UKL3 1982 aa12.58□□□□□ -0.4
SHMT2-218ENST00000555213 BRD1O95696 1058 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 IFNAR1P17181 557 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 SYT1P21579 422 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 SLC35G1Q2M3R5 365 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 MORN1Q5T089 497 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 NSMFQ6X4W1 530 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 HEATR3Q7Z4Q2 680 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 SLAIN1Q8ND83 568 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 RNF26Q9BY78 433 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-218ENST00000555213 SMC3Q9UQE7 1217 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 PTPN22Q9Y2R2 807 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 MGAMO43451 1857 aa12.57□□□□□ -0.4
SHMT2-218ENST00000555213 ZSWIM8A7E2V4 1837 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 PTPDC1A2A3K4 754 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 POTEB2H3BUK9 544 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 HOXC6P09630 235 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 XRCC5P13010 732 aaKnown RBP12.56□□□□□ -0.4
SHMT2-218ENST00000555213 CYP2B6P20813 491 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 SSRP1Q08945 709 aaKnown RBP12.56□□□□□ -0.4
SHMT2-218ENST00000555213 FUT2Q10981 343 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 SLC9C1Q4G0N8 1177 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 MUM1L1Q5H9M0 696 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 PPP1R18Q6NYC8 613 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 RNF207Q6ZRF8 634 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 TNPO1Q92973 898 aaKnown RBP12.56□□□□□ -0.4
SHMT2-218ENST00000555213 MPHOSPH6Q99547 160 aaKnown RBP12.56□□□□□ -0.4
SHMT2-218ENST00000555213 SLC26A6Q9BXS9 759 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 A1CFQ9NQ94 594 aaKnown RBP12.56□□□□□ -0.4
SHMT2-218ENST00000555213 GABRQQ9UN88 632 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms