RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 NOM1Q5C9Z4 860 aaKnown RBP11.76□□□□□ -0.53
SYNE2-215ENST00000554997 WWC2Q6AWC2 1192 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 HEATR3Q7Z4Q2 680 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 SAMD3Q8N6K7 520 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 JMYQ8N9B5 988 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 FAM184AQ8NB25 1140 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 SHCBP1Q8NEM2 672 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 CHST13Q8NET6 341 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 TRERF1Q96PN7 1200 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 ALG1Q9BT22 464 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 MRPL11Q9Y3B7 192 aaKnown RBP11.76□□□□□ -0.53
SYNE2-215ENST00000554997 KIF3AQ9Y496 699 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 ABCB11O95342 1321 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 PTPRFP10586 1907 aa11.76□□□□□ -0.53
SYNE2-215ENST00000554997 STXBP3O00186 592 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 STRNO43815 780 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 ALAS1P13196 640 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 ERCC3P19447 782 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 SLC4A3P48751 1232 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 USH1GQ495M9 461 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 MCF2L2Q86YR7 1114 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 TEX2Q8IWB9 1127 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 CCDC12Q8WUD4 166 aaPredicted RBP11.75□□□□□ -0.53
SYNE2-215ENST00000554997 GPKOWQ92917 476 aaPredicted RBP eCLIP11.75□□□□□ -0.53
SYNE2-215ENST00000554997 CWC22Q9HCG8 908 aaKnown RBP11.75□□□□□ -0.53
SYNE2-215ENST00000554997 MAP3K20Q9NYL2 800 aaKnown RBP11.75□□□□□ -0.53
SYNE2-215ENST00000554997 FBXO40Q9UH90 709 aa11.75□□□□□ -0.53
SYNE2-215ENST00000554997 SMCO2A6NFE2 343 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 GPR25O00155 361 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 PDIA4P13667 645 aaKnown RBP11.74□□□□□ -0.53
SYNE2-215ENST00000554997 MAPK4P31152 587 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 MRPL12P52815 198 aaKnown RBP11.74□□□□□ -0.53
SYNE2-215ENST00000554997 SP3Q02447 781 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 LARP1BQ659C4 914 aaKnown RBP11.74□□□□□ -0.53
SYNE2-215ENST00000554997 GALNT17Q6IS24 598 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 TYW1BQ6NUM6 668 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 PPP1R18Q6NYC8 613 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.74□□□□□ -0.53
SYNE2-215ENST00000554997 NCAPG2Q86XI2 1143 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 CCAR1Q8IX12 1150 aaKnown RBP11.74□□□□□ -0.53
SYNE2-215ENST00000554997 CLEC4DQ8WXI8 215 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 AIFM3Q96NN9 605 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 ZMYND12Q9H0C1 365 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 GLT8D2Q9H1C3 349 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 PSTPIP2Q9H939 334 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 EFCC1Q9HA90 598 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 FOXD4L1Q9NU39 408 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 DAXXQ9UER7 740 aaPredicted RBP11.74□□□□□ -0.53
SYNE2-215ENST00000554997 RLFQ13129 1914 aa11.74□□□□□ -0.53
SYNE2-215ENST00000554997 ESYT2A0FGR8 921 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 OPLAHO14841 1288 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 PDCP20941 246 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 GNA11P29992 359 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 NAPAP54920 295 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 NLRP5P59047 1200 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 GHRHRQ02643 423 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 TRIM29Q14134 588 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 MUM1L1Q5H9M0 696 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 ABRAQ8N0Z2 381 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 SPRYD3Q8NCJ5 442 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 CCDC148Q8NFR7 591 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 FBXO18Q8NFZ0 1043 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 TBC1D5Q92609 795 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 SHISA4Q96DD7 197 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 C8orf76Q96K31 380 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 PHF20Q9BVI0 1012 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 PORCNQ9H237 461 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 ACAD9Q9H845 621 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 C6orf50Q9HD87 102 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 RIC8AQ9NPQ8 531 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 RNF146Q9NTX7 359 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 VPS54Q9P1Q0 977 aa11.73□□□□□ -0.53
SYNE2-215ENST00000554997 GCOM1H8Y6P7 765 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-215ENST00000554997 PIK3CDO00329 1044 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 POLR2MP0CAP2 368 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 FCER1AP12319 257 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 CALML3P27482 149 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 LACTBP83111 547 aaPredicted RBP11.72□□□□□ -0.53
SYNE2-215ENST00000554997 KRT40Q6A162 431 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 PLEKHH3Q7Z736 793 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 ANKRD35Q8N283 1001 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 BICD2Q8TD16 824 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 IPO9Q96P70 1041 aaKnown RBP11.72□□□□□ -0.53
SYNE2-215ENST00000554997 HOMER2Q9NSB8 354 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 GJB4Q9NTQ9 266 aa11.72□□□□□ -0.53
SYNE2-215ENST00000554997 SLC15A5A6NIM6 579 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 NFIBO00712 420 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 MEIS2O14770 477 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 FKTNO75072 461 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 CFBP00751 764 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 MMP1P03956 469 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 TAL1P17542 331 aaPredicted RBP11.71□□□□□ -0.53
SYNE2-215ENST00000554997 PTPREP23469 700 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 HSD17B4P51659 736 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 ADCY7P51828 1080 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 FCGRTP55899 365 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 BAATQ14032 418 aaPredicted RBP11.71□□□□□ -0.53
SYNE2-215ENST00000554997 KCTD2Q14681 263 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 KIF22Q14807 665 aa11.71□□□□□ -0.53
SYNE2-215ENST00000554997 MCTP2Q6DN12 878 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms