RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 TMC6Q7Z403 805 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 POTEDQ86YR6 584 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 DAGLBQ8NCG7 672 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 MED15Q96RN5 788 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 TMEM39BQ9GZU3 492 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 EHD4Q9H223 541 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 FEZ2Q9UHY8 353 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 RGPD3A6NKT7 1758 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 RGPD4Q7Z3J3 1758 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 SPDYE2BA6NHP3 402 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 TDP2O95551 362 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 SPDYE6P0CI01 402 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 GNA11P29992 359 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 HNRNPH2P55795 449 aaKnown RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 HDLBPQ00341 1268 aaKnown RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 GOLGA8FQ08AF8 430 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 GOLGA8DPQ0D2H9 430 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 MORC3Q14149 939 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 DHX8Q14562 1220 aaKnown RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 DLGAP5Q15398 846 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 ZYXQ15942 572 aaKnown RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 CC2D2BQ6DHV5 1058 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 FBXO38Q6PIJ6 1188 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 RTKN2Q8IZC4 609 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 LRRC15Q8TF66 581 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 CCDC12Q8WUD4 166 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 MRFAP1L1Q96HT8 127 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 BPIFA3Q9BQP9 254 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 SERPINC1P01008 464 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 TECP42680 631 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 SARSP49591 514 aaKnown RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 ADCY7P51828 1080 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 E2F4Q16254 413 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 ZFP91Q96JP5 570 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L15C9J2P7 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L13C9JLJ4 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 TMEM232C9JQI7 657 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L11C9JVI0 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L18D6R9N7 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L22D6RA61 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L17D6RBQ6 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L19D6RCP7 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L20D6RJB6 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 ECE1P42892 770 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 FKBP1AP62942 108 aaKnown RBP13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L24Q0WX57 530 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP17L6PQ6QN14 398 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 OGFOD1Q8N543 542 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 NFE2L3Q9Y4A8 694 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 STAT6P42226 847 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 TXKP42681 527 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 TPM4P67936 248 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 NBPF9Q3BBW0 867 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USH1GQ495M9 461 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 KRT25Q7Z3Z0 450 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-212ENST00000554467 NEK8Q86SG6 692 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 IQUBQ8NA54 791 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 CCDC17Q96LX7 622 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 MRIQ9BWK5 157 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.19□□□□□ -0.3
SHMT2-212ENST00000554467 SAMSN1Q9NSI8 373 aaKnown RBP13.19□□□□□ -0.3
SHMT2-212ENST00000554467 ZNF70Q9UC06 446 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-212ENST00000554467 ZNF646O15015 1829 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-212ENST00000554467 PNMA6FA0A0J9YX94 578 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 A0A1W2PRG0 241 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 F5H6K3 240 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 SLC37A4O43826 429 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 NEMFO60524 1076 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 TPM3P06753 285 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 KLRC3Q07444 240 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 DPYDQ12882 1025 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 PDXDC2PQ6P474 469 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 KANSL2Q9H9L4 492 aa13.19□□□□□ -0.3
SHMT2-212ENST00000554467 USP27XA6NNY8 438 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 EGFRP00533 1210 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 UBA7P41226 1012 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 QRICH1Q2TAL8 776 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 GALNT17Q6IS24 598 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 KANK3Q6NY19 840 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 TATDN1Q6P1N9 297 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 SH3RF1Q7Z6J0 888 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 NIM1KQ8IY84 436 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 CALCOCO1Q9P1Z2 691 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 ZNF215Q9UL58 517 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-212ENST00000554467 CYP2C19P33261 490 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 CXCL9Q07325 125 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 R3HDM1Q15032 1099 aaKnown RBP13.18□□□□□ -0.3
SHMT2-212ENST00000554467 NT5DC1Q5TFE4 455 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 CCDC112Q8NEF3 446 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 ACER1Q8TDN7 264 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 TMOD2Q9NZR1 351 aa13.18□□□□□ -0.3
SHMT2-212ENST00000554467 IKBKBO14920 756 aa13.17□□□□□ -0.3
SHMT2-212ENST00000554467 EDIL3O43854 480 aa13.17□□□□□ -0.3
SHMT2-212ENST00000554467 NDUFB10O96000 172 aa13.17□□□□□ -0.3
SHMT2-212ENST00000554467 VIL1P09327 827 aaKnown RBP13.17□□□□□ -0.3
SHMT2-212ENST00000554467 OR52Z1P0C646 297 aa13.17□□□□□ -0.3
SHMT2-212ENST00000554467 LONP1P36776 959 aaKnown RBP13.17□□□□□ -0.3
SHMT2-212ENST00000554467 UBASH3AP57075 661 aa13.17□□□□□ -0.3
SHMT2-212ENST00000554467 ARL6IP4Q66PJ3 421 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms