RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 WDR78Q5VTH9 848 aa14.13□□□□□ -0.15
SHMT2-209ENST00000553949 WWC2Q6AWC2 1192 aa14.13□□□□□ -0.15
SHMT2-209ENST00000553949 CHST13Q8NET6 341 aa14.13□□□□□ -0.15
SHMT2-209ENST00000553949 ZNF296Q8WUU4 475 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-209ENST00000553949 CLEC4DQ8WXI8 215 aa14.13□□□□□ -0.15
SHMT2-209ENST00000553949 GPKOWQ92917 476 aaPredicted RBP eCLIP14.13□□□□□ -0.15
SHMT2-209ENST00000553949 COA7Q96BR5 231 aa14.13□□□□□ -0.15
SHMT2-209ENST00000553949 ACAD9Q9H845 621 aa14.13□□□□□ -0.15
SHMT2-209ENST00000553949 MRPL11Q9Y3B7 192 aaKnown RBP14.13□□□□□ -0.15
SHMT2-209ENST00000553949 hCG_1984214I3L0E3 225 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 STXBP3O00186 592 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 FOXN1O15353 648 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 ECM2O94769 699 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-209ENST00000553949 CTGFP29279 349 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 PSMC4P43686 418 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 FCGRTP55899 365 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 HMGN5P82970 282 aaKnown RBP14.12□□□□□ -0.15
SHMT2-209ENST00000553949 KIF22Q14807 665 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 MUM1L1Q5H9M0 696 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 ZNF713Q8N859 430 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-209ENST00000553949 ARHGAP39Q9C0H5 1083 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 CWC22Q9HCG8 908 aaKnown RBP14.12□□□□□ -0.15
SHMT2-209ENST00000553949 BARHL2Q9NY43 387 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 FBXO40Q9UH90 709 aa14.12□□□□□ -0.15
SHMT2-209ENST00000553949 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-209ENST00000553949 NFIBO00712 420 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 TNPO2O14787 897 aaKnown RBP14.11□□□□□ -0.15
SHMT2-209ENST00000553949 HSPA8P11142 646 aaKnown RBP14.11□□□□□ -0.15
SHMT2-209ENST00000553949 CTCFP49711 727 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-209ENST00000553949 NAPAP54920 295 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 BECN1Q14457 450 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 TYW1BQ6NUM6 668 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 PPP1R18Q6NYC8 613 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 GPR142Q7Z601 462 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 PLEKHH3Q7Z736 793 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 CD99L2Q8TCZ2 262 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 WASF1Q92558 559 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 ERO1AQ96HE7 468 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 TRIM47Q96LD4 638 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 AIFM3Q96NN9 605 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 MMP19Q99542 508 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 TSHZ2Q9NRE2 1034 aa14.11□□□□□ -0.15
SHMT2-209ENST00000553949 OPLAHO14841 1288 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 STRNO43815 780 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 FCER1AP12319 257 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 PTPREP23469 700 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 CAP1Q01518 475 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 KCTD2Q14681 263 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.1□□□□□ -0.15
SHMT2-209ENST00000553949 MCF2L2Q86YR7 1114 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 FAM184AQ8NB25 1140 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 RGS22Q8NE09 1264 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 CCDC12Q8WUD4 166 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-209ENST00000553949 INTS4Q96HW7 963 aaKnown RBP14.1□□□□□ -0.15
SHMT2-209ENST00000553949 ALG1Q9BT22 464 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 A1CFQ9NQ94 594 aaKnown RBP14.1□□□□□ -0.15
SHMT2-209ENST00000553949 VPS54Q9P1Q0 977 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 SMC3Q9UQE7 1217 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 IVNS1ABPQ9Y6Y0 642 aa14.1□□□□□ -0.15
SHMT2-209ENST00000553949 COL11A1P12107 1806 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-209ENST00000553949 BAZ2BQ9UIF8 2168 aaKnown RBP14.1□□□□□ -0.15
SHMT2-209ENST00000553949 GRB14Q14449 540 aa14.09□□□□□ -0.15
SHMT2-209ENST00000553949 NSMFQ6X4W1 530 aa14.09□□□□□ -0.15
SHMT2-209ENST00000553949 RNF207Q6ZRF8 634 aa14.09□□□□□ -0.15
SHMT2-209ENST00000553949 ABRAQ8N0Z2 381 aa14.09□□□□□ -0.15
SHMT2-209ENST00000553949 ANKRD35Q8N283 1001 aa14.09□□□□□ -0.15
SHMT2-209ENST00000553949 SHISA4Q96DD7 197 aa14.09□□□□□ -0.15
SHMT2-209ENST00000553949 PSTPIP2Q9H939 334 aa14.09□□□□□ -0.15
SHMT2-209ENST00000553949 SH3GLB2Q9NR46 395 aa14.09□□□□□ -0.15
SHMT2-209ENST00000553949 SMCO2A6NFE2 343 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 SLC15A5A6NIM6 579 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 GNRH1P01148 92 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 XBP1P17861 261 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 GJB2P29033 226 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 ANP32AP39687 249 aaKnown RBP14.08□□□□□ -0.16
SHMT2-209ENST00000553949 LBX1P52954 281 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 RPS6P62753 249 aaKnown RBP14.08□□□□□ -0.16
SHMT2-209ENST00000553949 GHRHRQ02643 423 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 BAATQ14032 418 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-209ENST00000553949 ARHGEF6Q15052 776 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 MORN1Q5T089 497 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 FAM177A1Q8N128 213 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-209ENST00000553949 CCDC148Q8NFR7 591 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 SOCS4Q8WXH5 440 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 TBC1D5Q92609 795 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 MAF1Q9H063 256 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 ZMYND12Q9H0C1 365 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 GJB4Q9NTQ9 266 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 FOXD4L1Q9NU39 408 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 CYP39A1Q9NYL5 469 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 GJD2Q9UKL4 321 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 PFASO15067 1338 aa14.08□□□□□ -0.16
SHMT2-209ENST00000553949 ESYT2A0FGR8 921 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 GCOM1H8Y6P7 765 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-209ENST00000553949 PIK3CDO00329 1044 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 CFBP00751 764 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 PGK2P07205 417 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 HSP90AA1P07900 732 aaKnown RBP14.07□□□□□ -0.16
SHMT2-209ENST00000553949 POLR2MP0CAP2 368 aa14.07□□□□□ -0.16
SHMT2-209ENST00000553949 CALML3P27482 149 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms