RNA–Protein interactions for RNA: ENST00000550160.5

CNOT2-223, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 5

Gene CNOT2, Length 993 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-223	ENST00000550160	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	PITPNM1	O00562	1244 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	PPP1R11	O60927	126 aa	Predicted RBP	13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	APLP1	P51693	650 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	SREBF2	Q12772	1141 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	MOGS	Q13724	837 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	LBX2	Q6XYB7	198 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	BLID	Q8IZY5	108 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	CPXCR1	Q8N123	301 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	BRI3BP	Q8WY22	251 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	PSTPIP2	Q9H939	334 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	ZCCHC17	Q9NP64	241 aa	Known RBP	13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	ADAMTS5	Q9UNA0	930 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	ZDHHC9	Q9Y397	364 aa		13.33	□□□□□ -0.28
CNOT2-223	ENST00000550160	BTBD19	C9JJ37	291 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	PDHX	O00330	501 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	ATP2A1	O14983	1001 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	PRR29	P0C7W0	189 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	U2AF2	P26368	475 aa	Known RBP eCLIP	13.32	□□□□□ -0.28	8e-8	■□□□□ 10.4
CNOT2-223	ENST00000550160	HERVK_113	P62684	666 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	REST	Q13127	1097 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	TKFC	Q3LXA3	575 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	GPAT2	Q6NUI2	795 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	MCF2L2	Q86YR7	1114 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	NOSTRIN	Q8IVI9	506 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	REXO1	Q8N1G1	1221 aa	Known RBP	13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	PARK7	Q99497	189 aa	Known RBP	13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	TEX13B	Q9BXU2	312 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	RAVER2	Q9HCJ3	691 aa	Known RBP	13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	RIC8A	Q9NPQ8	531 aa		13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	NOL7	Q9UMY1	257 aa	Known RBP	13.32	□□□□□ -0.28
CNOT2-223	ENST00000550160	CCDC194	A0A1B0GVG4	234 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	TESPA1	A2RU30	521 aa	Predicted RBP	13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	BTBD18	B2RXH4	712 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	ALAS1	P13196	640 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	COPB2	P35606	906 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	PLS1	Q14651	629 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	ATL3	Q6DD88	541 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	TYW1B	Q6NUM6	668 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	KRT25	Q7Z3Z0	450 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	SAMD3	Q8N6K7	520 aa		13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	TNPO1	Q92973	898 aa	Known RBP	13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	ZNF396	Q96N95	335 aa	Predicted RBP	13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	P2RX7	Q99572	595 aa	Known RBP	13.31	□□□□□ -0.28
CNOT2-223	ENST00000550160	GOLGA6L22	H0YM25	854 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	NCL	P19338	710 aa	Known RBP	13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	STAT3	P40763	770 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	GCLC	P48506	637 aa	Predicted RBP	13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	NOG	Q13253	232 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	DEFB115	Q30KQ5	88 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	SNRNP48	Q6IEG0	339 aa	Known RBP	13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	AGBL1	Q96MI9	1066 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	PAGR1	Q9BTK6	254 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	MAF1	Q9H063	256 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	EHMT1	Q9H9B1	1298 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	RABGAP1	Q9Y3P9	1069 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	ZNF536	O15090	1300 aa		13.3	□□□□□ -0.28
CNOT2-223	ENST00000550160	RASSF10	A6NK89	507 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	FAM155A	B1AL88	458 aa	Predicted RBP	13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	KIF28P	B7ZC32	967 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	FOS	P01100	380 aa	Predicted RBP	13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	POLR2M	P0CAP2	368 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	KRT85	P78386	507 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	GRM1	Q13255	1194 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	NR5A1	Q13285	461 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	AP3B2	Q13367	1082 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	TMEM132B	Q14DG7	1078 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	NONO	Q15233	471 aa	Known RBP eCLIP	13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	NPY5R	Q15761	445 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	CSPP1	Q1MSJ5	1256 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	RILPL1	Q5EBL4	403 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	MYSM1	Q5VVJ2	828 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	CHST13	Q8NET6	341 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	REPS2	Q8NFH8	660 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	OXER1	Q8TDS5	423 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	SHISA4	Q96DD7	197 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	HOMER2	Q9NSB8	354 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	RNF146	Q9NTX7	359 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	MAP3K20	Q9NYL2	800 aa	Known RBP	13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	FBXO40	Q9UH90	709 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	CFAP45	Q9UL16	551 aa		13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	ZNF214	Q9UL59	606 aa	Predicted RBP	13.29	□□□□□ -0.28
CNOT2-223	ENST00000550160	SPDYE3	A6NKU9	549 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	PIK3CD	O00329	1044 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	SLC25A27	O95847	323 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	CFB	P00751	764 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	TRAPPC10	P48553	1259 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	CCNA1	P78396	465 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	CLEC17A	Q6ZS10	378 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	PIK3AP1	Q6ZUJ8	805 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	RIOX2	Q8IUF8	465 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	FAM43A	Q8N2R8	423 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	CAPNS2	Q96L46	248 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	TRERF1	Q96PN7	1200 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	SPATC1L	Q9H0A9	340 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	ACAD9	Q9H845	621 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	PCDHA6	Q9UN73	950 aa		13.28	□□□□□ -0.28
CNOT2-223	ENST00000550160	PCDHA8	Q9Y5H6	950 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms