RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 VPS37CA5D8V6 355 aaPredicted RBP18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 PPP1R11O60927 126 aaPredicted RBP18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 U2AF2P26368 475 aaKnown RBP eCLIP18.39■□□□□ 0.537e-7■■■■□ 19.7
PRPF40A-212ENST00000545856 KRT2P35908 639 aa18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 STAT3P40763 770 aa18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 ADCY7P51828 1080 aa18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 AP3B2Q13367 1082 aa18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 ATL3Q6DD88 541 aa18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 IFNL1Q8IU54 200 aa18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 RIOX2Q8IUF8 465 aa18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 GPKOWQ92917 476 aaPredicted RBP eCLIP18.39■□□□□ 0.534e-6■■□□□ 11.8
PRPF40A-212ENST00000545856 CFHR5Q9BXR6 569 aa18.39■□□□□ 0.53
PRPF40A-212ENST00000545856 hCG_1642624A0A1W2PR95 340 aa18.38■□□□□ 0.53
PRPF40A-212ENST00000545856 FOSP01100 380 aaPredicted RBP18.38■□□□□ 0.53
PRPF40A-212ENST00000545856 FAM110CQ1W6H9 321 aa18.38■□□□□ 0.53
PRPF40A-212ENST00000545856 DIS3L2Q8IYB7 885 aaKnown RBP18.38■□□□□ 0.53
PRPF40A-212ENST00000545856 REXO1Q8N1G1 1221 aaKnown RBP18.38■□□□□ 0.53
PRPF40A-212ENST00000545856 FAM43AQ8N2R8 423 aa18.38■□□□□ 0.53
PRPF40A-212ENST00000545856 PTPN18Q99952 460 aa18.38■□□□□ 0.53
PRPF40A-212ENST00000545856 ZNF236Q9UL36 1845 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 SMCO2A6NFE2 343 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 KIF23Q02241 960 aaPredicted RBP18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 MKRN3Q13064 507 aaKnown RBP18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 TMEM132BQ14DG7 1078 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 SNRNP48Q6IEG0 339 aaKnown RBP18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 CYP4F22Q6NT55 531 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 CCDC174Q6PII3 467 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 PAXIP1Q6ZW49 1069 aaPredicted RBP18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 BLIDQ8IZY5 108 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 PIBF1Q8WXW3 757 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 AIFM3Q96NN9 605 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 SPATC1LQ9H0A9 340 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 MROH8Q9H579 483 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 PSTPIP2Q9H939 334 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 ZFYVE28Q9HCC9 887 aa18.37■□□□□ 0.53
PRPF40A-212ENST00000545856 ADGRA2Q96PE1 1338 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 IGF2BP3O00425 579 aaKnown RBP eCLIP18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 PPFIA3O75145 1194 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 F13A1P00488 732 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 TRAPPC10P48553 1259 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 GNL2Q13823 731 aaKnown RBP18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 NPY5RQ15761 445 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 TYW1BQ6NUM6 668 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 KRT25Q7Z3Z0 450 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 GPRC5AQ8NFJ5 357 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 COA7Q96BR5 231 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 ACAD9Q9H845 621 aa18.36■□□□□ 0.53
PRPF40A-212ENST00000545856 PFASO15067 1338 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 M0R2N6 131 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 CA12O43570 354 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 ERVK-9P63128 1117 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 ERVK-24P63145 666 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 TAF1CQ15572 869 aaPredicted RBP18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 USH1GQ495M9 461 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 NOSTRINQ8IVI9 506 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 CPXCR1Q8N123 301 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 EHMT1Q9H9B1 1298 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 RAVER2Q9HCJ3 691 aaKnown RBP18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 RBPJLQ9UBG7 517 aa18.35■□□□□ 0.53
PRPF40A-212ENST00000545856 LOC102724159A0A0B4J2E5 919 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 GCOM1H8Y6P7 765 aaPredicted RBP18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 TLR2O60603 784 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 POLR2MP0CAP2 368 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 HSPA6P17066 643 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 CLK2P49760 499 aaKnown RBP18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 HSD17B4P51659 736 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 ORC2Q13416 577 aaPredicted RBP18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 PWP2Q15269 919 aaKnown RBP18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 AGBL1Q96MI9 1066 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 TRERF1Q96PN7 1200 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 NAP1L4Q99733 375 aaKnown RBP18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 RNF146Q9NTX7 359 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 KCNJ14Q9UNX9 436 aa18.34■□□□□ 0.53
PRPF40A-212ENST00000545856 PLXNB2O15031 1838 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 CNMDO75829 334 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 ALAS1P13196 640 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 RESTQ13127 1097 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 RILPL1Q5EBL4 403 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 SAMD1Q6SPF0 538 aaPredicted RBP18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 ABRAQ8N0Z2 381 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 TNFRSF25Q93038 417 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 SHISA4Q96DD7 197 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 BTBD7Q9P203 1132 aa18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 NOL7Q9UMY1 257 aaKnown RBP18.33■□□□□ 0.53
PRPF40A-212ENST00000545856 ZNFX1Q9P2E3 1918 aaKnown RBP18.33■□□□□ 0.52
PRPF40A-212ENST00000545856 CCDC194A0A1B0GVG4 234 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 CYP2C8P10632 490 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 BCRP11274 1271 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 C1QTNF8P60827 252 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 MCTP1Q6DN14 999 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 CLEC17AQ6ZS10 378 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 CLEC4DQ8WXI8 215 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 SAGE1Q9NXZ1 904 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 ZDHHC9Q9Y397 364 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 MYH7BA7E2Y1 1941 aa18.32■□□□□ 0.52
PRPF40A-212ENST00000545856 TCHHQ07283 1943 aa18.31■□□□□ 0.52
PRPF40A-212ENST00000545856 SPDYE3A6NKU9 549 aa18.31■□□□□ 0.52
PRPF40A-212ENST00000545856 BTBD18B2RXH4 712 aa18.31■□□□□ 0.52
PRPF40A-212ENST00000545856 MEIS2O14770 477 aa18.31■□□□□ 0.52
PRPF40A-212ENST00000545856 OPLAHO14841 1288 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms