RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CAGE1Q8TC20 777 aa16.85■□□□□ 0.29
USP28-214ENST00000545540 ANKRD36CQ5JPF3 1778 aa16.85■□□□□ 0.29
USP28-214ENST00000545540 PSMA7O14818 248 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 CALML3P27482 149 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 CACNB1Q02641 598 aaPredicted RBP16.84■□□□□ 0.29
USP28-214ENST00000545540 CASP8Q14790 479 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 CNOT6LQ96LI5 555 aaKnown RBP16.84■□□□□ 0.29
USP28-214ENST00000545540 POTEMA6NI47 508 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 H7C1D1 291 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 SSBP05455 408 aaKnown RBP eCLIP16.84■□□□□ 0.29
USP28-214ENST00000545540 EZH2Q15910 746 aaKnown RBP16.84■□□□□ 0.29
USP28-214ENST00000545540 LRRC47Q8N1G4 583 aaKnown RBP16.84■□□□□ 0.29
USP28-214ENST00000545540 TBCKQ8TEA7 893 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 NOC4LQ9BVI4 516 aaKnown RBP16.84■□□□□ 0.29
USP28-214ENST00000545540 TRIM34Q9BYJ4 488 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 BCORQ6W2J9 1755 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 LGALS16A8MUM7 142 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 PDE2AO00408 941 aaPredicted RBP16.84■□□□□ 0.29
USP28-214ENST00000545540 IRX5P78411 483 aaPredicted RBP16.84■□□□□ 0.29
USP28-214ENST00000545540 C2orf54Q08AI8 447 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 PTPROQ16827 1216 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 NUDT12Q9BQG2 462 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 UBXN6Q9BZV1 441 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 MMRN2Q9H8L6 949 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 MLXIPQ9HAP2 919 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 RMND1Q9NWS8 449 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 L1RE1Q9UN81 338 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 DOCK2Q92608 1830 aa16.84■□□□□ 0.29
USP28-214ENST00000545540 USP17L5A8MUK1 530 aa16.83■□□□□ 0.29
USP28-214ENST00000545540 MYBL2P10244 700 aa16.83■□□□□ 0.29
USP28-214ENST00000545540 TTI2Q6NXR4 508 aa16.83■□□□□ 0.29
USP28-214ENST00000545540 TIAM2Q8IVF5 1701 aa16.83■□□□□ 0.29
USP28-214ENST00000545540 NHEJ1Q9H9Q4 299 aaPredicted RBP16.83■□□□□ 0.29
USP28-214ENST00000545540 ZSCAN26Q16670 478 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 GPCPD1Q9NPB8 672 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 TCP11L1Q9NUJ3 509 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 EXOC1Q9NV70 894 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 LRWD1Q9UFC0 647 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 TRIM66O15016 1216 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 CAPN2P17655 700 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 SPAG1Q07617 926 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 TMC4Q7Z404 712 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 JAKMIP2Q96AA8 810 aa16.83■□□□□ 0.28
USP28-214ENST00000545540 DOT1LQ8TEK3 1739 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 RASA1P20936 1047 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 RNASE9P60153 205 aaKnown RBP16.82■□□□□ 0.28
USP28-214ENST00000545540 SLC7A5Q01650 507 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 BRD3Q15059 726 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 CCDC96Q2M329 555 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 HDXQ7Z353 690 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 DNAAF5Q86Y56 855 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 ZNF507Q8TCN5 953 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 HDAC7Q8WUI4 952 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 CEP95Q96GE4 821 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 EYA3Q99504 573 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 MAP2K7O14733 419 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 SEMA3EO15041 775 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 TDP2O95551 362 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 TRAPPC10P48553 1259 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 AMPD2Q01433 879 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 ARID5AQ03989 594 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 TPTE2Q6XPS3 522 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 C2CD5Q86YS7 1000 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 ARHGEF1Q92888 912 aaKnown RBP16.82■□□□□ 0.28
USP28-214ENST00000545540 C8orf37Q96NL8 207 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 TRIM9Q9C026 710 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 BARHL2Q9NY43 387 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 LRP5O75197 1615 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 ZNF263O14978 683 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 NCK2O43639 380 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 BTDP43251 543 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 STIM1Q13586 685 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 CLEC4GQ6UXB4 293 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 CRACR2AQ9BSW2 395 aa16.82■□□□□ 0.28
USP28-214ENST00000545540 ITIH6Q6UXX5 1313 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 ABCA3Q99758 1704 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 TM4SF1P30408 202 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 UBE2SQ16763 222 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 ARL6IP4Q66PJ3 421 aaKnown RBP16.81■□□□□ 0.28
USP28-214ENST00000545540 SAR1BQ9Y6B6 198 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 KDM4FA0A1W2PPD8 638 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 SLC16A2P36021 539 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 GRM4Q14833 912 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 KIAA0895Q8NCT3 520 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 GIMAP8Q8ND71 665 aaPredicted RBP16.81■□□□□ 0.28
USP28-214ENST00000545540 CCDC51Q96ER9 411 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 MXD3Q9BW11 206 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 TANGO6Q9C0B7 1094 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 SEMA6BQ9H3T3 888 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 KBTBD4Q9NVX7 518 aa16.81■□□□□ 0.28
USP28-214ENST00000545540 M0R2N6 131 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 CDK8P49336 464 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 P2RX5Q93086 422 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 NLRC4Q9NPP4 1024 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 CALCOCO1Q9P1Z2 691 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 RIMBP2O15034 1052 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 SLC37A4O43826 429 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 OR52Z1P0C646 297 aa16.8■□□□□ 0.28
USP28-214ENST00000545540 TTC19Q6DKK2 380 aaPredicted RBP16.8■□□□□ 0.28
USP28-214ENST00000545540 DGKHQ86XP1 1220 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms