RNA–Protein interactions for RNA: ENST00000545432.5

RTN3-214, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-214ENST00000545432 RAD21O60216 631 aa17.62■□□□□ 0.41
RTN3-214ENST00000545432 ZEB2O60315 1214 aa17.62■□□□□ 0.41
RTN3-214ENST00000545432 SMPD1P17405 629 aa17.62■□□□□ 0.41
RTN3-214ENST00000545432 TKFCQ3LXA3 575 aa17.62■□□□□ 0.41
RTN3-214ENST00000545432 ZSCAN25Q6NSZ9 544 aa17.62■□□□□ 0.41
RTN3-214ENST00000545432 A1CFQ9NQ94 594 aaKnown RBP17.62■□□□□ 0.41
RTN3-214ENST00000545432 PLA2G6O60733 806 aa17.61■□□□□ 0.41
RTN3-214ENST00000545432 ATP2A2P16615 1042 aaKnown RBP17.61■□□□□ 0.41
RTN3-214ENST00000545432 KCNQ1P51787 676 aa17.61■□□□□ 0.41
RTN3-214ENST00000545432 PHOSPHO2Q8TCD6 241 aa17.61■□□□□ 0.41
RTN3-214ENST00000545432 ALDH8A1Q9H2A2 487 aaPredicted RBP17.61■□□□□ 0.41
RTN3-214ENST00000545432 EPHX3Q9H6B9 360 aa17.61■□□□□ 0.41
RTN3-214ENST00000545432 ACAD9Q9H845 621 aa17.61■□□□□ 0.41
RTN3-214ENST00000545432 MKNK2Q9HBH9 465 aa17.61■□□□□ 0.41
RTN3-214ENST00000545432 TCF20Q9UGU0 1960 aaKnown RBP17.6■□□□□ 0.41
RTN3-214ENST00000545432 DYNC1LI2O43237 492 aaPredicted RBP17.6■□□□□ 0.41
RTN3-214ENST00000545432 GPR37L1O60883 481 aa17.6■□□□□ 0.41
RTN3-214ENST00000545432 TTLL4Q14679 1199 aa17.6■□□□□ 0.41
RTN3-214ENST00000545432 TMEM67Q5HYA8 995 aa17.6■□□□□ 0.41
RTN3-214ENST00000545432 CEP95Q96GE4 821 aa17.6■□□□□ 0.41
RTN3-214ENST00000545432 AP5M1Q9H0R1 490 aa17.6■□□□□ 0.41
RTN3-214ENST00000545432 CTDP1Q9Y5B0 961 aaPredicted RBP17.6■□□□□ 0.41
RTN3-214ENST00000545432 GBF1Q92538 1859 aa17.6■□□□□ 0.41
RTN3-214ENST00000545432 PLIN4Q96Q06 1357 aa17.59■□□□□ 0.41
RTN3-214ENST00000545432 TTLL1O95922 423 aa17.59■□□□□ 0.41
RTN3-214ENST00000545432 SUPT20HL2P0C7V6 817 aa17.59■□□□□ 0.41
RTN3-214ENST00000545432 BMP3P12645 472 aa17.59■□□□□ 0.41
RTN3-214ENST00000545432 SCLYQ96I15 445 aa17.59■□□□□ 0.41
RTN3-214ENST00000545432 GMCL1Q96IK5 515 aa17.59■□□□□ 0.41
RTN3-214ENST00000545432 PDGFCQ9NRA1 345 aa17.59■□□□□ 0.41
RTN3-214ENST00000545432 EPOPA6NHQ4 379 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 RFXAPO00287 272 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 HMMRO75330 724 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 PTGS1P23219 599 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 SLC4A3P48751 1232 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 TMEM63BQ5T3F8 832 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 SLFN13Q68D06 897 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 FAM160B2Q86V87 743 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 NEDD1Q8NHV4 660 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 STAG1Q8WVM7 1258 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 VTA1Q9NP79 307 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 C11orf16Q9NQ32 467 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 RNF146Q9NTX7 359 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 ZBTB40Q9NUA8 1239 aa17.58■□□□□ 0.4
RTN3-214ENST00000545432 RBM47A0AV96 593 aaKnown RBP17.57■□□□□ 0.4
RTN3-214ENST00000545432 CA3P07451 260 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 RFC2P35250 354 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 PSMC6P62333 389 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 DUSP28Q4G0W2 176 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 NOL8Q76FK4 1167 aaKnown RBP17.57■□□□□ 0.4
RTN3-214ENST00000545432 ZNF444Q8N0Y2 327 aaPredicted RBP17.57■□□□□ 0.4
RTN3-214ENST00000545432 PANK1Q8TE04 598 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 CHURC1Q8WUH1 139 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 OSBP2Q969R2 916 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 SLC9A7Q96T83 725 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 ZNF287Q9HBT7 754 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 EPB41L4AQ9HCS5 686 aaPredicted RBP17.57■□□□□ 0.4
RTN3-214ENST00000545432 CYP39A1Q9NYL5 469 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 COG6Q9Y2V7 657 aa17.57■□□□□ 0.4
RTN3-214ENST00000545432 REV3LO60673 3130 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 LOC102724159A0A0B4J2E5 919 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 TMEM232C9JQI7 657 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 GTPBP6O43824 516 aaPredicted RBP17.56■□□□□ 0.4
RTN3-214ENST00000545432 LPXNO60711 386 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 STAT2P52630 851 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 TAP1Q03518 808 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 PWP2Q15269 919 aaKnown RBP17.56■□□□□ 0.4
RTN3-214ENST00000545432 TMEM31Q5JXX7 168 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 TRERF1Q96PN7 1200 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 HOMER2Q9NSB8 354 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 TRANK1O15050 2925 aa17.56■□□□□ 0.4
RTN3-214ENST00000545432 ZBBXA8MT70 800 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 MINDY4BA8MYZ0 360 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 PI4K2BG5E9Z4 385 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 PITPNM1O00562 1244 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 ARHGEF15O94989 841 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 PURAQ00577 322 aaKnown RBP17.55■□□□□ 0.4
RTN3-214ENST00000545432 LRRC47Q8N1G4 583 aaKnown RBP17.55■□□□□ 0.4
RTN3-214ENST00000545432 MICALL1Q8N3F8 863 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 KHSRPQ92945 711 aaKnown RBP eCLIP17.55■□□□□ 0.47e-11■□□□□ 8.6
RTN3-214ENST00000545432 HLA-CQ95604 372 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 TRMT13Q9NUP7 481 aaKnown RBP17.55■□□□□ 0.4
RTN3-214ENST00000545432 POLR3EQ9NVU0 708 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 LMCD1Q9NZU5 365 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 HCN4Q9Y3Q4 1203 aa17.55■□□□□ 0.4
RTN3-214ENST00000545432 TNKSO95271 1327 aa17.54■□□□□ 0.4
RTN3-214ENST00000545432 CYP2C9P11712 490 aa17.54■□□□□ 0.4
RTN3-214ENST00000545432 GNAT2P19087 354 aa17.54■□□□□ 0.4
RTN3-214ENST00000545432 FBXO16Q8IX29 292 aaPredicted RBP17.54■□□□□ 0.4
RTN3-214ENST00000545432 KBTBD3Q8NAB2 608 aa17.54■□□□□ 0.4
RTN3-214ENST00000545432 APPBP2Q92624 585 aa17.54■□□□□ 0.4
RTN3-214ENST00000545432 DDX49Q9Y6V7 483 aaKnown RBP17.54■□□□□ 0.4
RTN3-214ENST00000545432 BRWD1Q9NSI6 2320 aa17.54■□□□□ 0.4
RTN3-214ENST00000545432 MUC6Q6W4X9 2439 aa17.53■□□□□ 0.4
RTN3-214ENST00000545432 PATL2C9JE40 543 aaKnown RBP17.53■□□□□ 0.4
RTN3-214ENST00000545432 PRDM1O75626 825 aa17.53■□□□□ 0.4
RTN3-214ENST00000545432 IQCF3P0C7M6 154 aa17.53■□□□□ 0.4
RTN3-214ENST00000545432 ACTN1P12814 892 aa17.53■□□□□ 0.4
RTN3-214ENST00000545432 NOVP48745 357 aa17.53■□□□□ 0.4
RTN3-214ENST00000545432 PTPN11Q06124 597 aaPredicted RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms