RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-221	ENST00000544983	HOMER1	Q86YM7	354 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	MCF2L2	Q86YR7	1114 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	CCDC82	Q8N4S0	544 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	WASF1	Q92558	559 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	SNX21	Q969T3	373 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	AGBL1	Q96MI9	1066 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	TRERF1	Q96PN7	1200 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	LARP6	Q9BRS8	491 aa	Known RBP	13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	GLT8D2	Q9H1C3	349 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	PORCN	Q9H237	461 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	EFCC1	Q9HA90	598 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	NCOA5	Q9HCD5	579 aa	Known RBP	13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	TSKS	Q9UJT2	592 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983		V9GY48	417 aa	Predicted RBP	13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	MYH6	P13533	1939 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	PFAS	O15067	1338 aa		13.58	□□□□□ -0.24
SNHG1-221	ENST00000544983	DEXI	O95424	95 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	ALAS1	P13196	640 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	PTPRE	P23469	700 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	PFKFB3	Q16875	520 aa	Predicted RBP	13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	PPP1R18	Q6NYC8	613 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	NOL8	Q76FK4	1167 aa	Known RBP	13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	CD99L2	Q8TCZ2	262 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	TRIM47	Q96LD4	638 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	NUDT12	Q9BQG2	462 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	SH3GLB2	Q9NR46	395 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	RNF146	Q9NTX7	359 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	STK36	Q9NRP7	1315 aa		13.57	□□□□□ -0.24
SNHG1-221	ENST00000544983	XRCC5	P13010	732 aa	Known RBP	13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	SCG2	P13521	617 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	SNAP25	P60880	206 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	HMGN5	P82970	282 aa	Known RBP	13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	GRB14	Q14449	540 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	WDR78	Q5VTH9	848 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	TRMT44	Q8IYL2	757 aa	Known RBP	13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	CMTR1	Q8N1G2	835 aa	Known RBP	13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	ANKRD35	Q8N283	1001 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	TMX3	Q96JJ7	454 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	MMP19	Q99542	508 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	SLC26A6	Q9BXS9	759 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	BARHL2	Q9NY43	387 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	SRRD	Q9UH36	339 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	DIS3	Q9Y2L1	958 aa	Known RBP	13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	KIF3A	Q9Y496	699 aa		13.56	□□□□□ -0.24
SNHG1-221	ENST00000544983	LOC102724159	A0A0B4J2E5	919 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	PEX10	O60683	326 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	PPP1R11	O60927	126 aa	Predicted RBP	13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	HOXC6	P09630	235 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	XBP1	P17861	261 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	RGS2	P41220	211 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	GHRHR	Q02643	423 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	IRF5	Q13568	498 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	PWP2	Q15269	919 aa	Known RBP	13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	USH1G	Q495M9	461 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	MORN1	Q5T089	497 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	CTU1	Q7Z7A3	348 aa	Known RBP	13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	NECAB1	Q8N987	351 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	PHKB	Q93100	1093 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	DDX11	Q96FC9	970 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	HOMER2	Q9NSB8	354 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	GJD2	Q9UKL4	321 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	RIPK3	Q9Y572	518 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	MGAM	O43451	1857 aa		13.55	□□□□□ -0.24
SNHG1-221	ENST00000544983	ESYT2	A0FGR8	921 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	LARGE1	O95461	756 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	ADORA2A	P29274	412 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	SLC4A3	P48751	1232 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	MAP2K5	Q13163	448 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	MCTP2	Q6DN12	878 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	OTOP1	Q7RTM1	612 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	HEATR3	Q7Z4Q2	680 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	DPP9	Q86TI2	863 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	HSCB	Q8IWL3	235 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	NSUN7	Q8NE18	718 aa	Known RBP	13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	CCDC148	Q8NFR7	591 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	CLEC4D	Q8WXI8	215 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	PIBF1	Q8WXW3	757 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	USP6NL	Q92738	828 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	ZNF236	Q9UL36	1845 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	CASP8AP2	Q9UKL3	1982 aa		13.54	□□□□□ -0.24
SNHG1-221	ENST00000544983	DOCK3	Q8IZD9	2030 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	DNAJC25-GNG10	A0A024R161	153 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983		B4DLN1	442 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983		K7ELQ4	463 aa	Predicted RBP	13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	PIK3CD	O00329	1044 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	CD2BP2	O95400	341 aa	Known RBP	13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	CTDNEP1	O95476	244 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	CTGF	P29279	349 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	GNA11	P29992	359 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	MRPL12	P52815	198 aa	Known RBP	13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	NAPA	P54920	295 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	CUL4A	Q13619	759 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	PKN1	Q16512	942 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	MUM1L1	Q5H9M0	696 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	WWC2	Q6AWC2	1192 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	GALNT17	Q6IS24	598 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	RNF207	Q6ZRF8	634 aa		13.53	□□□□□ -0.24
SNHG1-221	ENST00000544983	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms