RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 SLC35G1Q2M3R5 365 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 CASC1Q6TDU7 716 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 CCDC144CPQ8IYA2 1237 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 RASEFQ8IZ41 740 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 RGS22Q8NE09 1264 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 MORC4Q8TE76 937 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 MAP3K14Q99558 947 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 HTATIP2Q9BUP3 242 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 ABHD16BQ9H3Z7 469 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 C11orf49Q9H6J7 331 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 RIOX1Q9H6W3 641 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 GPHNQ9NQX3 736 aaPredicted RBP13.34□□□□□ -0.27
YBX3-216ENST00000544622 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.34□□□□□ -0.27
YBX3-216ENST00000544622 ERICH2A1L162 156 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 KLRF2D3W0D1 207 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 DNM1LO00429 736 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 LIFRP42702 1097 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 EXOSC10Q01780 885 aaKnown RBP13.33□□□□□ -0.28
YBX3-216ENST00000544622 ACVR2BQ13705 512 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 BAATQ14032 418 aaPredicted RBP13.33□□□□□ -0.28
YBX3-216ENST00000544622 CDC37Q16543 378 aaPredicted RBP13.33□□□□□ -0.28
YBX3-216ENST00000544622 QRICH1Q2TAL8 776 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 TMEM67Q5HYA8 995 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 ARMCX2Q7L311 632 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 TMEM87BQ96K49 555 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 PURBQ96QR8 312 aaKnown RBP13.33□□□□□ -0.28
YBX3-216ENST00000544622 CNPY2Q9Y2B0 182 aa13.33□□□□□ -0.28
YBX3-216ENST00000544622 FRMPD3Q5JV73 1810 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 CEP290O15078 2479 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 LOC102724159A0A0B4J2E5 919 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 ASB14A6NK59 587 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 SH2B2O14492 632 aaPredicted RBP13.32□□□□□ -0.28
YBX3-216ENST00000544622 PRC1O43663 620 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 CYTH3O43739 400 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 AKR1A1P14550 325 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 PWP2Q15269 919 aaKnown RBP13.32□□□□□ -0.28
YBX3-216ENST00000544622 ADCK5Q3MIX3 580 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 RNF20Q5VTR2 975 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 TMTC2Q8N394 836 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 ARRDC4Q8NCT1 418 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 DPF3Q92784 378 aa13.32□□□□□ -0.28
YBX3-216ENST00000544622 OPLAHO14841 1288 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 ADCY6O43306 1168 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 EPB41L2O43491 1005 aaKnown RBP13.31□□□□□ -0.28
YBX3-216ENST00000544622 PPP1R11O60927 126 aaPredicted RBP13.31□□□□□ -0.28
YBX3-216ENST00000544622 ADAMTS4O75173 837 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 SMARCA1P28370 1054 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 HSPA4P34932 840 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 RPS6P62753 249 aaKnown RBP13.31□□□□□ -0.28
YBX3-216ENST00000544622 NKX3-2P78367 333 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 GHRHRQ02643 423 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 LRRC41Q15345 812 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 ANO1Q5XXA6 986 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 CCSAPQ6IQ19 270 aaPredicted RBP13.31□□□□□ -0.28
YBX3-216ENST00000544622 NSMFQ6X4W1 530 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 RNF207Q6ZRF8 634 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 SGMS1Q86VZ5 419 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 TBC1D5Q92609 795 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 NEK1Q96PY6 1258 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 VAT1LQ9HCJ6 419 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 FAM184BQ9ULE4 1060 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 SZT2Q5T011 3432 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 ABCB11O95342 1321 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 LCTP09848 1927 aa13.31□□□□□ -0.28
YBX3-216ENST00000544622 H0YGN5 161 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 ZBTB5O15062 677 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 DUSP11O75319 330 aaKnown RBP13.3□□□□□ -0.28
YBX3-216ENST00000544622 DDAH1O94760 285 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 RARBP10826 455 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 EDNRBP24530 442 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 CCDC144BQ3MJ40 725 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 USH1GQ495M9 461 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 GJC2Q5T442 439 aaPredicted RBP13.3□□□□□ -0.28
YBX3-216ENST00000544622 TAPT1Q6NXT6 567 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 SLC30A10Q6XR72 485 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 CATIPQ7Z7H3 387 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 FBXO11Q86XK2 927 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 ZNF654Q8IZM8 581 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 KLHDC9Q8NEP7 349 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 DNERQ8NFT8 737 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 XPNPEP3Q9NQH7 507 aa13.3□□□□□ -0.28
YBX3-216ENST00000544622 DDX49Q9Y6V7 483 aaKnown RBP13.3□□□□□ -0.28
YBX3-216ENST00000544622 PTPDC1A2A3K4 754 aa13.29□□□□□ -0.28
YBX3-216ENST00000544622 EVI5O60447 810 aa13.29□□□□□ -0.28
YBX3-216ENST00000544622 PGK1P00558 417 aa13.29□□□□□ -0.28
YBX3-216ENST00000544622 ALDH5A1P51649 535 aaPredicted RBP13.29□□□□□ -0.28
YBX3-216ENST00000544622 C1orf53Q5VUE5 145 aa13.29□□□□□ -0.28
YBX3-216ENST00000544622 DHX32Q7L7V1 743 aaKnown RBP13.29□□□□□ -0.28
YBX3-216ENST00000544622 LENG1Q96BZ8 264 aaPredicted RBP13.29□□□□□ -0.28
YBX3-216ENST00000544622 MYL10Q9BUA6 226 aa13.29□□□□□ -0.28
YBX3-216ENST00000544622 AMNQ9BXJ7 453 aa13.29□□□□□ -0.28
YBX3-216ENST00000544622 SENP6Q9GZR1 1112 aaPredicted RBP13.29□□□□□ -0.28
YBX3-216ENST00000544622 ADD3Q9UEY8 706 aaKnown RBP13.29□□□□□ -0.28
YBX3-216ENST00000544622 GNEQ9Y223 722 aaKnown RBP13.29□□□□□ -0.28
YBX3-216ENST00000544622 ALPK3Q96L96 1907 aa13.29□□□□□ -0.28
YBX3-216ENST00000544622 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.28□□□□□ -0.28
YBX3-216ENST00000544622 RBM47A0AV96 593 aaKnown RBP13.28□□□□□ -0.28
YBX3-216ENST00000544622 CTAGE5O15320 804 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 CALML3P27482 149 aa13.28□□□□□ -0.28
YBX3-216ENST00000544622 CST5P28325 142 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms