RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 PSMC4P43686 418 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 PFKFB3Q16875 520 aaPredicted RBP14.07□□□□□ -0.16
DDX55-210ENST00000543016 PPP1R18Q6NYC8 613 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 NOL8Q76FK4 1167 aaKnown RBP14.07□□□□□ -0.16
DDX55-210ENST00000543016 HOMER1Q86YM7 354 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 CCDC82Q8N4S0 544 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 CCDC12Q8WUD4 166 aaPredicted RBP14.07□□□□□ -0.16
DDX55-210ENST00000543016 SOCS4Q8WXH5 440 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 TMX3Q96JJ7 454 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 AGBL1Q96MI9 1066 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 TRERF1Q96PN7 1200 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 GLT8D2Q9H1C3 349 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 NCOA5Q9HCD5 579 aaKnown RBP14.07□□□□□ -0.16
DDX55-210ENST00000543016 PRDM10Q9NQV6 1147 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 RNF146Q9NTX7 359 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 SLC5A4Q9NY91 659 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 PCDHA1Q9Y5I3 950 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 ALAS1P13196 640 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 SCG2P13521 617 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 PTPREP23469 700 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 SNAP25P60880 206 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 HMGN5P82970 282 aaKnown RBP14.06□□□□□ -0.16
DDX55-210ENST00000543016 KCTD2Q14681 263 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 GPR142Q7Z601 462 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 CMTR1Q8N1G2 835 aaKnown RBP14.06□□□□□ -0.16
DDX55-210ENST00000543016 PORCNQ9H237 461 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 EFCC1Q9HA90 598 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 SH3GLB2Q9NR46 395 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 PFASO15067 1338 aa14.06□□□□□ -0.16
DDX55-210ENST00000543016 BAZ2BQ9UIF8 2168 aaKnown RBP14.05□□□□□ -0.16
DDX55-210ENST00000543016 LARGE1O95461 756 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 XBP1P17861 261 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 GHRHRQ02643 423 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 WDR78Q5VTH9 848 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 HSCBQ8IWL3 235 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 NECAB1Q8N987 351 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 MMP19Q99542 508 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 NUDT12Q9BQG2 462 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 SLC26A6Q9BXS9 759 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 BARHL2Q9NY43 387 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 TSKSQ9UJT2 592 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 KIF3AQ9Y496 699 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 RIPK3Q9Y572 518 aa14.05□□□□□ -0.16
DDX55-210ENST00000543016 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.05□□□□□ -0.16
DDX55-210ENST00000543016 LOC102724159A0A0B4J2E5 919 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 K7ELQ4 463 aaPredicted RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 PPP1R11O60927 126 aaPredicted RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 CD2BP2O95400 341 aaKnown RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 XRCC5P13010 732 aaKnown RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 LBX1P52954 281 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 IRF5Q13568 498 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 GRB14Q14449 540 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 PWP2Q15269 919 aaKnown RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 PKN2Q16513 984 aaKnown RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 USH1GQ495M9 461 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 TRMT44Q8IYL2 757 aaKnown RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 ANKRD35Q8N283 1001 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 NSUN7Q8NE18 718 aaKnown RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 CCDC148Q8NFR7 591 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 CD99L2Q8TCZ2 262 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 CLEC4DQ8WXI8 215 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 PHKBQ93100 1093 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 TRIM47Q96LD4 638 aa14.04□□□□□ -0.16
DDX55-210ENST00000543016 DIS3Q9Y2L1 958 aaKnown RBP14.04□□□□□ -0.16
DDX55-210ENST00000543016 ESYT2A0FGR8 921 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 PEX10O60683 326 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 CTDNEP1O95476 244 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 HOXC6P09630 235 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 RGS2P41220 211 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 SLC4A3P48751 1232 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 MRPL12P52815 198 aaKnown RBP14.03□□□□□ -0.16
DDX55-210ENST00000543016 MAP2K5Q13163 448 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 CUL4AQ13619 759 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 PKN1Q16512 942 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 MORN1Q5T089 497 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 MCTP2Q6DN12 878 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 GALNT17Q6IS24 598 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 HEATR3Q7Z4Q2 680 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 CCDC83Q8IWF9 413 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 SMARCC2Q8TAQ2 1214 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 PIBF1Q8WXW3 757 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 DDX11Q96FC9 970 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 INTS4Q96HW7 963 aaKnown RBP14.03□□□□□ -0.16
DDX55-210ENST00000543016 HOMER2Q9NSB8 354 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 ORC3Q9UBD5 711 aaPredicted RBP14.03□□□□□ -0.16
DDX55-210ENST00000543016 SRRDQ9UH36 339 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 GJD2Q9UKL4 321 aa14.03□□□□□ -0.16
DDX55-210ENST00000543016 COL11A1P12107 1806 aaPredicted RBP14.02□□□□□ -0.16
DDX55-210ENST00000543016 PTPDC1A2A3K4 754 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 B4DLN1 442 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 GCOM1H8Y6P7 765 aaPredicted RBP14.02□□□□□ -0.17
DDX55-210ENST00000543016 PIK3CDO00329 1044 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 POLR2MP0CAP2 368 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 GNA11P29992 359 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 NAPAP54920 295 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 WWC2Q6AWC2 1192 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 RNF207Q6ZRF8 634 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 CTU1Q7Z7A3 348 aaKnown RBP14.02□□□□□ -0.17
DDX55-210ENST00000543016 DPP9Q86TI2 863 aa14.02□□□□□ -0.17
DDX55-210ENST00000543016 MSL3Q8N5Y2 521 aaKnown RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms