RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PKN1Q16512 942 aa19.77■□□□□ 0.76
LIG1-204ENST00000542460 ZNF713Q8N859 430 aaPredicted RBP19.77■□□□□ 0.76
LIG1-204ENST00000542460 CWC22Q9HCG8 908 aaKnown RBP19.77■□□□□ 0.76
LIG1-204ENST00000542460 HOMER2Q9NSB8 354 aa19.77■□□□□ 0.76
LIG1-204ENST00000542460 RNF146Q9NTX7 359 aa19.77■□□□□ 0.76
LIG1-204ENST00000542460 MRPL11Q9Y3B7 192 aaKnown RBP19.77■□□□□ 0.76
LIG1-204ENST00000542460 CASP8AP2Q9UKL3 1982 aa19.77■□□□□ 0.75
LIG1-204ENST00000542460 PTPDC1A2A3K4 754 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 SCG2P13521 617 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 WDR78Q5VTH9 848 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 HEATR3Q7Z4Q2 680 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 COA7Q96BR5 231 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 ERO1AQ96HE7 468 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 ACAD9Q9H845 621 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 ORC3Q9UBD5 711 aaPredicted RBP19.76■□□□□ 0.75
LIG1-204ENST00000542460 PSMC4P43686 418 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 FCGRTP55899 365 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 CUL4AQ13619 759 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 GPR142Q7Z601 462 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 SMARCC2Q8TAQ2 1214 aa19.76■□□□□ 0.75
LIG1-204ENST00000542460 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.76■□□□□ 0.75
LIG1-204ENST00000542460 TNPO2O14787 897 aaKnown RBP19.75■□□□□ 0.75
LIG1-204ENST00000542460 STRNO43815 780 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 JAK2O60674 1132 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 FDPSP14324 419 aaKnown RBP19.75■□□□□ 0.75
LIG1-204ENST00000542460 TAL1P17542 331 aaPredicted RBP19.75■□□□□ 0.75
LIG1-204ENST00000542460 HMGN5P82970 282 aaKnown RBP19.75■□□□□ 0.75
LIG1-204ENST00000542460 ARHGEF6Q15052 776 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 MUM1L1Q5H9M0 696 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 WWC2Q6AWC2 1192 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 PLEKHH3Q7Z736 793 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 WASF1Q92558 559 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 GPKOWQ92917 476 aaPredicted RBP eCLIP19.75■□□□□ 0.75
LIG1-204ENST00000542460 DDX11Q96FC9 970 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 MAF1Q9H063 256 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 BARHL2Q9NY43 387 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 IVNS1ABPQ9Y6Y0 642 aa19.75■□□□□ 0.75
LIG1-204ENST00000542460 COL11A1P12107 1806 aaPredicted RBP19.74■□□□□ 0.75
LIG1-204ENST00000542460 BAZ2BQ9UIF8 2168 aaKnown RBP19.74■□□□□ 0.75
LIG1-204ENST00000542460 DTNBO60941 627 aa19.74■□□□□ 0.75
LIG1-204ENST00000542460 FCER1AP12319 257 aa19.74■□□□□ 0.75
LIG1-204ENST00000542460 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.74■□□□□ 0.75
LIG1-204ENST00000542460 MCF2L2Q86YR7 1114 aa19.74■□□□□ 0.75
LIG1-204ENST00000542460 CD99L2Q8TCZ2 262 aa19.74■□□□□ 0.75
LIG1-204ENST00000542460 CLEC4DQ8WXI8 215 aa19.74■□□□□ 0.75
LIG1-204ENST00000542460 ARHGAP39Q9C0H5 1083 aa19.74■□□□□ 0.75
LIG1-204ENST00000542460 ECM2O94769 699 aaPredicted RBP19.73■□□□□ 0.75
LIG1-204ENST00000542460 CTGFP29279 349 aa19.73■□□□□ 0.75
LIG1-204ENST00000542460 NAPAP54920 295 aa19.73■□□□□ 0.75
LIG1-204ENST00000542460 KCTD2Q14681 263 aa19.73■□□□□ 0.75
LIG1-204ENST00000542460 PPP1R18Q6NYC8 613 aa19.73■□□□□ 0.75
LIG1-204ENST00000542460 ABRAQ8N0Z2 381 aa19.73■□□□□ 0.75
LIG1-204ENST00000542460 RGS22Q8NE09 1264 aa19.73■□□□□ 0.75
LIG1-204ENST00000542460 TRIM47Q96LD4 638 aa19.73■□□□□ 0.75
LIG1-204ENST00000542460 SH3GLB2Q9NR46 395 aa19.73■□□□□ 0.75
LIG1-204ENST00000542460 STXBP3O00186 592 aa19.72■□□□□ 0.75
LIG1-204ENST00000542460 NFIBO00712 420 aa19.72■□□□□ 0.75
LIG1-204ENST00000542460 GNRH1P01148 92 aa19.72■□□□□ 0.75
LIG1-204ENST00000542460 PTPREP23469 700 aa19.72■□□□□ 0.75
LIG1-204ENST00000542460 BECN1Q14457 450 aa19.72■□□□□ 0.75
LIG1-204ENST00000542460 ANKRD35Q8N283 1001 aa19.72■□□□□ 0.75
LIG1-204ENST00000542460 CCDC12Q8WUD4 166 aaPredicted RBP19.72■□□□□ 0.75
LIG1-204ENST00000542460 INTS4Q96HW7 963 aaKnown RBP19.72■□□□□ 0.75
LIG1-204ENST00000542460 MMP19Q99542 508 aa19.72■□□□□ 0.75
LIG1-204ENST00000542460 SLC15A5A6NIM6 579 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 XBP1P17861 261 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 TYW1BQ6NUM6 668 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 NSMFQ6X4W1 530 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 FAM177A1Q8N128 213 aaPredicted RBP19.71■□□□□ 0.75
LIG1-204ENST00000542460 SAMD3Q8N6K7 520 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 ALG1Q9BT22 464 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 SMC3Q9UQE7 1217 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 OPLAHO14841 1288 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 HOXD10P28358 340 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 GRB14Q14449 540 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 FAM184AQ8NB25 1140 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 CCDC148Q8NFR7 591 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 AIFM3Q96NN9 605 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 PSTPIP2Q9H939 334 aa19.71■□□□□ 0.75
LIG1-204ENST00000542460 A1CFQ9NQ94 594 aaKnown RBP19.71■□□□□ 0.75
LIG1-204ENST00000542460 MAP3K20Q9NYL2 800 aaKnown RBP19.71■□□□□ 0.75
LIG1-204ENST00000542460 PFASO15067 1338 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 ADORA2AP29274 412 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 CAP1Q01518 475 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 MORN1Q5T089 497 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 RNF207Q6ZRF8 634 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 TEX2Q8IWB9 1127 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 SOCS4Q8WXH5 440 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 ABHD8Q96I13 439 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 NUDT12Q9BQG2 462 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 GLT8D2Q9H1C3 349 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 CYP39A1Q9NYL5 469 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 VPS54Q9P1Q0 977 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 GJD2Q9UKL4 321 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 KIF3AQ9Y496 699 aa19.7■□□□□ 0.74
LIG1-204ENST00000542460 ESYT2A0FGR8 921 aa19.69■□□□□ 0.74
LIG1-204ENST00000542460 SMCO2A6NFE2 343 aa19.69■□□□□ 0.74
LIG1-204ENST00000542460 CFBP00751 764 aa19.69■□□□□ 0.74
LIG1-204ENST00000542460 HSP90AA1P07900 732 aaKnown RBP19.69■□□□□ 0.74
LIG1-204ENST00000542460 GJB2P29033 226 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms