RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 PRR5LQ6MZQ0 368 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 AGXT2Q9BYV1 514 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 ARMT1Q9H993 441 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 METTL14Q9HCE5 456 aaKnown RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 PAPOLBQ9NRJ5 636 aaKnown RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 WDR37Q9Y2I8 494 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 GOLGA6L10A6NI86 522 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 ZNF213O14771 459 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 TGFB3P10600 412 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 ADRA2BP18089 450 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 KRT85P78386 507 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 KCNA1Q09470 495 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 RESTQ13127 1097 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 MIS18BP1Q6P0N0 1132 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 MB21D2Q8IYB1 491 aaPredicted RBP12.37□□□□□ -0.43
CDH3-203ENST00000542274 MIGA1Q8NAN2 632 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 SMYD1Q8NB12 490 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 SMARCC2Q8TAQ2 1214 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 CTNNBL1Q8WYA6 563 aaPredicted RBP12.37□□□□□ -0.43
CDH3-203ENST00000542274 SLC39A3Q9BRY0 314 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 CAPS2Q9BXY5 557 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 ATP6V0A4Q9HBG4 840 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 TACC3Q9Y6A5 838 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 FDPSP14324 419 aaKnown RBP12.37□□□□□ -0.43
CDH3-203ENST00000542274 ALOX15P16050 662 aaPredicted RBP12.37□□□□□ -0.43
CDH3-203ENST00000542274 PDCP20941 246 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 ENPP1P22413 925 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 GYG1P46976 350 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 PABPC4Q13310 644 aaKnown RBP eCLIP12.37□□□□□ -0.43
CDH3-203ENST00000542274 CEP85LQ5SZL2 805 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 CCDC183Q5T5S1 534 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 CC2D1AQ6P1N0 951 aaPredicted RBP12.37□□□□□ -0.43
CDH3-203ENST00000542274 CYB5R4Q7L1T6 521 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 WHAMMQ8TF30 809 aa12.37□□□□□ -0.43
CDH3-203ENST00000542274 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.37□□□□□ -0.43
CDH3-203ENST00000542274 EPB41L4AQ9HCS5 686 aaPredicted RBP12.37□□□□□ -0.43
CDH3-203ENST00000542274 KLF18A0A0U1RQI7 1052 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 KLRK1P26718 216 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 BTG3Q14201 252 aaPredicted RBP12.36□□□□□ -0.43
CDH3-203ENST00000542274 NANOGNBQ7Z5D8 188 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 COL23A1Q86Y22 540 aaPredicted RBP12.36□□□□□ -0.43
CDH3-203ENST00000542274 CCDC144CPQ8IYA2 1237 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 RNF168Q8IYW5 571 aaPredicted RBP12.36□□□□□ -0.43
CDH3-203ENST00000542274 HPS3Q969F9 1004 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 PGBD1Q96JS3 809 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 CLIC6Q96NY7 704 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 MINPP1Q9UNW1 487 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 B4E1Z4 1266 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 RGL2O15211 777 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 CBFA2T2O43439 604 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 PPP1R12BO60237 982 aaPredicted RBP12.36□□□□□ -0.43
CDH3-203ENST00000542274 SERPINB2P05120 415 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 CTDSPL2Q05D32 466 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 ENOX2Q16206 610 aaKnown RBP12.36□□□□□ -0.43
CDH3-203ENST00000542274 MSL1Q68DK7 614 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.36□□□□□ -0.43
CDH3-203ENST00000542274 LEO1Q8WVC0 666 aaPredicted RBP12.36□□□□□ -0.43
CDH3-203ENST00000542274 CCDC102AQ96A19 550 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 SPATA32Q96LK8 384 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 OSBPL10Q9BXB5 764 aa12.36□□□□□ -0.43
CDH3-203ENST00000542274 LSM1O15116 133 aaKnown RBP12.35□□□□□ -0.43
CDH3-203ENST00000542274 TM4SF1P30408 202 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 RPS8P62241 208 aaKnown RBP12.35□□□□□ -0.43
CDH3-203ENST00000542274 PDE4BQ07343 736 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 KRT72Q14CN4 511 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 RCN1Q15293 331 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 ADGRA1Q86SQ6 560 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 AMOTL1Q8IY63 956 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 CCDC150Q8NCX0 1101 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 UBXN4Q92575 508 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 AIDAQ96BJ3 306 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 MYL10Q9BUA6 226 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.35□□□□□ -0.43
CDH3-203ENST00000542274 HPS5Q9UPZ3 1129 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 NEDD4P46934 1319 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 TMEM221A6NGB7 291 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 GOLGA8BA8MQT2 603 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 UBE2Q2LH0YL09 131 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 PLSCR1O15162 318 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 NDUFB5O43674 189 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 TRIM21P19474 475 aaKnown RBP12.35□□□□□ -0.43
CDH3-203ENST00000542274 CUL4BQ13620 913 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 OTUD6AQ7L8S5 288 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 LCORLQ8N3X6 602 aa12.35□□□□□ -0.43
CDH3-203ENST00000542274 RSRC1Q96IZ7 334 aaKnown RBP12.35□□□□□ -0.43
CDH3-203ENST00000542274 STRBPQ96SI9 672 aaKnown RBP12.35□□□□□ -0.43
CDH3-203ENST00000542274 CFAP69A5D8W1 941 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 USP27XA6NNY8 438 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 CEP104O60308 925 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 HOXD10P28358 340 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 EN1Q05925 392 aaPredicted RBP12.34□□□□□ -0.43
CDH3-203ENST00000542274 LRRFIP1Q32MZ4 808 aaKnown RBP12.34□□□□□ -0.43
CDH3-203ENST00000542274 SEPT14Q6ZU15 432 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 RALYLQ86SE5 291 aaKnown RBP12.34□□□□□ -0.43
CDH3-203ENST00000542274 CKAP2LQ8IYA6 745 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 AKT1S1Q96B36 256 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 ZNF512BQ96KM6 892 aaPredicted RBP12.34□□□□□ -0.43
CDH3-203ENST00000542274 AIFM3Q96NN9 605 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 TUBGCP4Q9UGJ1 667 aa12.34□□□□□ -0.43
CDH3-203ENST00000542274 JAG2Q9Y219 1238 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms