RNA–Protein interactions for RNA: ENST00000542112.5

SNHG1-219, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 780 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-219	ENST00000542112	PHC3	Q8NDX5	983 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	TRIM58	Q8NG06	486 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	USP33	Q8TEY7	942 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	TEKT4	Q8WW24	435 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	RABGGTA	Q92696	567 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	P3H4	Q92791	437 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	CUL5	Q93034	780 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	GTPBP3	Q969Y2	492 aa	Known RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	ABHD17A	Q96GS6	310 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	RBM41	Q96IZ5	413 aa	Known RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	SH3GL1	Q99961	368 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	BCO2	Q9BYV7	579 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	OSBPL7	Q9BZF2	842 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	TSGA10	Q9BZW7	698 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	TRIM4	Q9C037	500 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	KCNF1	Q9H3M0	494 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	ACTR5	Q9H9F9	607 aa	Predicted RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	KIF9	Q9HAQ2	790 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	METTL14	Q9HCE5	456 aa	Known RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	STRN4	Q9NRL3	753 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	CUEDC1	Q9NWM3	386 aa	Predicted RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	TLR7	Q9NYK1	1049 aa	Known RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	ZFAT	Q9P243	1243 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	GMPR2	Q9P2T1	348 aa	Known RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	ORC3	Q9UBD5	711 aa	Predicted RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	SALL4	Q9UJQ4	1053 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	PAIP2B	Q9ULR5	123 aa	Known RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	PYCARD	Q9ULZ3	195 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	TMCO1	Q9UM00	188 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	PARD3	Q8TEW0	1356 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	KIDINS220	Q9ULH0	1771 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	PLCH2	O75038	1416 aa		4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	NKTR	P30414	1462 aa	Known RBP	4.88	□□□□□ -1.63
SNHG1-219	ENST00000542112	SYCP2	Q9BX26	1530 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	INO80	Q9ULG1	1556 aa	Predicted RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	TARSL2	A2RTX5	802 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	GOLGA6L4	A6NEF3	574 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	SH3BP5	O60239	455 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	SHOX2	O60902	331 aa	Predicted RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	STK10	O94804	968 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	KIF4A	O95239	1232 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	TBC1D8	O95759	1140 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	CTSH	P09668	335 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCDC166	P0CW27	439 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	TROVE2	P10155	538 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	XBP1	P17861	261 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	CYP11B2	P19099	503 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	CD33	P20138	364 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	MX1	P20591	662 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	CNGA1	P29973	690 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	GSTT1	P30711	240 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	HOXA10	P31260	410 aa	Predicted RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	GBP2	P32456	591 aa	Predicted RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	AMPH	P49418	695 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	ST13	P50502	369 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	USP11	P51784	963 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	SNCB	Q16143	134 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	SEPT7	Q16181	437 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	PCSK7	Q16549	785 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	ARHGAP29	Q52LW3	1261 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	CPLX2	Q6PUV4	134 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	PI16	Q6UXB8	463 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	LCA5	Q86VQ0	697 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	METTL16	Q86W50	562 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	TRMT2A	Q8IZ69	625 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	LRRC43	Q8N309	656 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	PARD3B	Q8TEW8	1205 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	GIMAP1	Q8WWP7	306 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	RSPH1	Q8WYR4	309 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	RTF1	Q92541	710 aa	Known RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	SPDL1	Q96EA4	605 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	TMX3	Q96JJ7	454 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	DHRS1	Q96LJ7	313 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	C16orf45	Q96MC5	204 aa	Predicted RBP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	TCHP	Q9BT92	498 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	LRRCC1	Q9C099	1032 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	BRD8	Q9H0E9	1235 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	PCDH18	Q9HCL0	1135 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	DNAI1	Q9UI46	699 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	ZNF148	Q9UQR1	794 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	SUGT1	Q9Y2Z0	365 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	USP31	Q70CQ4	1352 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	ASXL2	Q76L83	1435 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	KDM5D	Q9BY66	1539 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	UNC13B	O14795	1591 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	GLI2	P10070	1586 aa		4.87	□□□□□ -1.63
SNHG1-219	ENST00000542112	BCORL1	Q5H9F3	1711 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	RICTOR	Q6R327	1708 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112		A0A1W2PP55	124 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	TMEM221	A6NGB7	291 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	SPDYE3	A6NKU9	549 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	POTEC	B2RU33	542 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	BIRC5	O15392	142 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	ZEB2	O60315	1214 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	USP17L7	P0C7H9	530 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCDC192	P0DO97	292 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	BCR	P11274	1271 aa		4.86	□□□□□ -1.63
SNHG1-219	ENST00000542112	XRCC5	P13010	732 aa	Known RBP	4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms