RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 PPM1KQ8N3J5 372 aa6.75□□□□□ -1.33
PRKDC-209ENST00000540819 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.75□□□□□ -1.33
PRKDC-209ENST00000540819 PUS7LQ9H0K6 701 aaKnown RBP6.75□□□□□ -1.33
PRKDC-209ENST00000540819 BRMS1Q9HCU9 246 aa6.75□□□□□ -1.33
PRKDC-209ENST00000540819 PRDM11Q9NQV5 511 aa6.75□□□□□ -1.33
PRKDC-209ENST00000540819 TMEM39AQ9NV64 488 aa6.75□□□□□ -1.33
PRKDC-209ENST00000540819 OBP2AQ9NY56 170 aa6.75□□□□□ -1.33
PRKDC-209ENST00000540819 USP25Q9UHP3 1055 aa6.75□□□□□ -1.33
PRKDC-209ENST00000540819 TMEM265A0A087WTH1 108 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 ENC1O14682 589 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 TCEA3O75764 348 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 FARP2O94887 1054 aaPredicted RBP6.74□□□□□ -1.33
PRKDC-209ENST00000540819 NPTXRO95502 500 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 FAAP100Q0VG06 881 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 PKN1Q16512 942 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 IFI16Q16666 785 aaKnown RBP6.74□□□□□ -1.33
PRKDC-209ENST00000540819 FAM83BQ5T0W9 1011 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 ZNF648Q5T619 568 aaPredicted RBP6.74□□□□□ -1.33
PRKDC-209ENST00000540819 CCDC70Q6NSX1 233 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 CCDC174Q6PII3 467 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 HDGFL2Q7Z4V5 671 aaPredicted RBP6.74□□□□□ -1.33
PRKDC-209ENST00000540819 STRA8Q7Z7C7 330 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 KISS1RQ969F8 398 aaPredicted RBP6.74□□□□□ -1.33
PRKDC-209ENST00000540819 HRASLS5Q96KN8 279 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 NECAB3Q96P71 396 aaPredicted RBP6.74□□□□□ -1.33
PRKDC-209ENST00000540819 YIPF4Q9BSR8 244 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 MIR1-1HGQ9H1L0 117 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 EHMT1Q9H9B1 1298 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 MKNK2Q9HBH9 465 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 PPP2R3BQ9Y5P8 575 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 SLC12A7Q9Y666 1083 aa6.74□□□□□ -1.33
PRKDC-209ENST00000540819 GPR39O43194 453 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 PRPF3O43395 683 aaKnown RBP6.73□□□□□ -1.33
PRKDC-209ENST00000540819 BRINP1O60477 761 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 CILPO75339 1184 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 ABLIM3O94929 683 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 RAPGEF3O95398 923 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 CCNFP41002 786 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 NCAPHQ15003 741 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 ALFQ53S48 1182 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 L1TD1Q5T7N2 865 aaKnown RBP6.73□□□□□ -1.33
PRKDC-209ENST00000540819 CNNM4Q6P4Q7 775 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 TTC6Q86TZ1 520 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.73□□□□□ -1.33
PRKDC-209ENST00000540819 PDILTQ8N807 584 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 ENAHQ8N8S7 591 aaPredicted RBP6.73□□□□□ -1.33
PRKDC-209ENST00000540819 PJA1Q8NG27 643 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 FAM168AQ92567 244 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 SARGQ9BW04 601 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 DAAM1Q9Y4D1 1078 aa6.73□□□□□ -1.33
PRKDC-209ENST00000540819 UPK3BL1B0FP48 263 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 UPK3BL2E5RIL1 263 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 LEFTY1O75610 366 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 RNASE1P07998 156 aaKnown RBP6.72□□□□□ -1.33
PRKDC-209ENST00000540819 ZSCAN20P17040 1043 aaPredicted RBP6.72□□□□□ -1.33
PRKDC-209ENST00000540819 CASP2P42575 452 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 DHCR24Q15392 516 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 LCE1DQ5T752 114 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 IL31Q6EBC2 164 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 SPATS2Q86XZ4 545 aaKnown RBP6.72□□□□□ -1.33
PRKDC-209ENST00000540819 CPXCR1Q8N123 301 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 LEO1Q8WVC0 666 aaPredicted RBP6.72□□□□□ -1.33
PRKDC-209ENST00000540819 JPH3Q8WXH2 748 aaPredicted RBP6.72□□□□□ -1.33
PRKDC-209ENST00000540819 DDX1Q92499 740 aaKnown RBP6.72□□□□□ -1.33
PRKDC-209ENST00000540819 NAP1L5Q96NT1 182 aaPredicted RBP6.72□□□□□ -1.33
PRKDC-209ENST00000540819 TM9SF2Q99805 663 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 DUSP23Q9BVJ7 150 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 EMILIN2Q9BXX0 1053 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 MRPL4Q9BYD3 311 aaKnown RBP6.72□□□□□ -1.33
PRKDC-209ENST00000540819 RHOBTB2Q9BYZ6 727 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 FBRSQ9HAH7 460 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 CARMIL2Q6F5E8 1435 aa6.72□□□□□ -1.33
PRKDC-209ENST00000540819 ANO9A1A5B4 782 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 VSTM5A8MXK1 200 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 TIMM44O43615 452 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 ATE1O95260 518 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 CEACAM5P06731 702 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 LDHCP07864 332 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 FAM163BP0C2L3 166 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 PHKG2P15735 406 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 GUCY2CP25092 1073 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 NEK3P51956 506 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 POU5F1Q01860 360 aaKnown RBP6.71□□□□□ -1.34
PRKDC-209ENST00000540819 STRN3Q13033 797 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 STAT4Q14765 748 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 SLC10A6Q3KNW5 377 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 MORC1Q86VD1 984 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 WFDC3Q8IUB2 231 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 KSR1Q8IVT5 923 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 TMEM40Q8WWA1 233 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 JARID2Q92833 1246 aaPredicted RBP6.71□□□□□ -1.34
PRKDC-209ENST00000540819 CLUHP3Q96NS8 147 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 STRBPQ96SI9 672 aaKnown RBP6.71□□□□□ -1.34
PRKDC-209ENST00000540819 SLC38A3Q99624 504 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 DHRS4Q9BTZ2 278 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 CCDC8Q9H0W5 538 aaPredicted RBP6.71□□□□□ -1.34
PRKDC-209ENST00000540819 AS3MTQ9HBK9 375 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 MBNL3Q9NUK0 354 aaKnown RBP6.71□□□□□ -1.34
PRKDC-209ENST00000540819 GTF2A1LQ9UNN4 478 aa6.71□□□□□ -1.34
PRKDC-209ENST00000540819 MCCP23508 829 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms