RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 NKX2-4Q9H2Z4 354 aa8.72□□□□□ -1.01
YBX3-209ENST00000540747 HIPK3Q9H422 1215 aa8.72□□□□□ -1.01
YBX3-209ENST00000540747 MKNK2Q9HBH9 465 aa8.72□□□□□ -1.01
YBX3-209ENST00000540747 ECHDC1Q9NTX5 307 aa8.72□□□□□ -1.01
YBX3-209ENST00000540747 RNF146Q9NTX7 359 aa8.72□□□□□ -1.01
YBX3-209ENST00000540747 RAPGEFL1Q9UHV5 662 aa8.72□□□□□ -1.01
YBX3-209ENST00000540747 Q9Y3F1 56 aa8.72□□□□□ -1.01
YBX3-209ENST00000540747 DDX49Q9Y6V7 483 aaKnown RBP8.72□□□□□ -1.01
YBX3-209ENST00000540747 BRWD1Q9NSI6 2320 aa8.72□□□□□ -1.01
YBX3-209ENST00000540747 GBF1Q92538 1859 aa8.71□□□□□ -1.01
YBX3-209ENST00000540747 ASB14A6NK59 587 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 MINDY4BA8MYZ0 360 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 M0R2C6 588 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 B4GALT4O60513 344 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 FGBP02675 491 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 ZFYP08048 801 aaPredicted RBP8.71□□□□□ -1.02
YBX3-209ENST00000540747 BMP1P13497 986 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 POU3F3P20264 500 aaPredicted RBP8.71□□□□□ -1.02
YBX3-209ENST00000540747 ITGA7Q13683 1181 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 TKFCQ3LXA3 575 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 SLFN13Q68D06 897 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 STAG1Q8WVM7 1258 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 TRPV6Q9H1D0 765 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 PDGFCQ9NRA1 345 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 HOMER2Q9NSB8 354 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 CYP39A1Q9NYL5 469 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 MSRAQ9UJ68 235 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.71□□□□□ -1.02
YBX3-209ENST00000540747 PCDHA11Q9Y5I1 949 aa8.71□□□□□ -1.02
YBX3-209ENST00000540747 SCN10AQ9Y5Y9 1956 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 RBM47A0AV96 593 aaKnown RBP8.7□□□□□ -1.02
YBX3-209ENST00000540747 PATL2C9JE40 543 aaKnown RBP8.7□□□□□ -1.02
YBX3-209ENST00000540747 TMEM232C9JQI7 657 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 GNAT2P19087 354 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 STAT2P52630 851 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 MUM1L1Q5H9M0 696 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 TSHZ3Q63HK5 1081 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 IQSEC1Q6DN90 963 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 RASGRP2Q7LDG7 609 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 OTOP2Q7RTS6 562 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 FAM160B2Q86V87 743 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 FBXO16Q8IX29 292 aaPredicted RBP8.7□□□□□ -1.02
YBX3-209ENST00000540747 IFNL3Q8IZI9 196 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 STK11IPQ8N1F8 1099 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 PPM1EQ8WY54 764 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 VTI1AQ96AJ9 217 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 UHRF1Q96T88 793 aaPredicted RBP8.7□□□□□ -1.02
YBX3-209ENST00000540747 ALDH8A1Q9H2A2 487 aaPredicted RBP8.7□□□□□ -1.02
YBX3-209ENST00000540747 MTIF3Q9H2K0 278 aaKnown RBP8.7□□□□□ -1.02
YBX3-209ENST00000540747 VTA1Q9NP79 307 aa8.7□□□□□ -1.02
YBX3-209ENST00000540747 DYNC1LI2O43237 492 aaPredicted RBP8.69□□□□□ -1.02
YBX3-209ENST00000540747 ARHGEF15O94989 841 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 MYOGP15173 224 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 PLA2G5P39877 138 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 SLC4A3P48751 1232 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 TDO2P48775 406 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 RABGGTBP53611 331 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 CCL23P55773 120 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 PSMC6P62333 389 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 TTLL4Q14679 1199 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 CCDC85BQ15834 202 aaPredicted RBP8.69□□□□□ -1.02
YBX3-209ENST00000540747 DUSP28Q4G0W2 176 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 ZNF444Q8N0Y2 327 aaPredicted RBP8.69□□□□□ -1.02
YBX3-209ENST00000540747 CHURC1Q8WUH1 139 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 TRERF1Q96PN7 1200 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 SEC62Q99442 399 aaKnown RBP8.69□□□□□ -1.02
YBX3-209ENST00000540747 DCTPP1Q9H773 170 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 SLC28A3Q9HAS3 691 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 ZNF287Q9HBT7 754 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 IL17RBQ9NRM6 502 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 PRR12Q9ULL5 1215 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 CTDP1Q9Y5B0 961 aaPredicted RBP8.69□□□□□ -1.02
YBX3-209ENST00000540747 SLC4A7Q9Y6M7 1214 aa8.69□□□□□ -1.02
YBX3-209ENST00000540747 MUC6Q6W4X9 2439 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 LOC102724159A0A0B4J2E5 919 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 EPOPA6NHQ4 379 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 ERC2O15083 957 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 ICAM1P05362 532 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 PFKMP08237 780 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 FGRP09769 529 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 ALAS1P13196 640 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 IGFBP4P22692 258 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 MCCP23508 829 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 SLC1A4P43007 532 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 PURAQ00577 322 aaKnown RBP8.68□□□□□ -1.02
YBX3-209ENST00000540747 TFAP4Q01664 338 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 PPARAQ07869 468 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 PWP2Q15269 919 aaKnown RBP8.68□□□□□ -1.02
YBX3-209ENST00000540747 ZMYM1Q5SVZ6 1142 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 C20orf194Q5TEA3 1177 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 RCSD1Q6JBY9 416 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 BTNL9Q6UXG8 535 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 PI4K2BQ8TCG2 481 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 SCLYQ96I15 445 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 NECAB3Q96P71 396 aaPredicted RBP8.68□□□□□ -1.02
YBX3-209ENST00000540747 PURBQ96QR8 312 aaKnown RBP8.68□□□□□ -1.02
YBX3-209ENST00000540747 AP5M1Q9H0R1 490 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 BCL11AQ9H165 835 aa8.68□□□□□ -1.02
YBX3-209ENST00000540747 RANBP17Q9H2T7 1088 aaKnown RBP8.68□□□□□ -1.02
YBX3-209ENST00000540747 CHMP4BQ9H444 224 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms