RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 CIZ1Q9ULV3 898 aaPredicted RBP12.18□□□□□ -0.46
VPS33A-204ENST00000540669 MTMR6Q9Y217 621 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 ZDHHC9Q9Y397 364 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 CASP8AP2Q9UKL3 1982 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 MYH7BA7E2Y1 1941 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 ABCB11O95342 1321 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 PLXNA1Q9UIW2 1896 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 PIK3CDO00329 1044 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 ADAMTS3O15072 1205 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 BRD1O95696 1058 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 MMP1P03956 469 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 CYP2C8P10632 490 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 GCLCP48506 637 aaPredicted RBP12.17□□□□□ -0.46
VPS33A-204ENST00000540669 CLK2P49760 499 aaKnown RBP12.17□□□□□ -0.46
VPS33A-204ENST00000540669 IRX3P78415 501 aaPredicted RBP12.17□□□□□ -0.46
VPS33A-204ENST00000540669 PKP1Q13835 747 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 FAM110CQ1W6H9 321 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 HOMER1Q86YM7 354 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 RIOX2Q8IUF8 465 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 SHCBP1Q8NEM2 672 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 SAGE1Q9NXZ1 904 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 KIF3AQ9Y496 699 aa12.17□□□□□ -0.46
VPS33A-204ENST00000540669 ZNFX1Q9P2E3 1918 aaKnown RBP12.16□□□□□ -0.46
VPS33A-204ENST00000540669 RAD21O60216 631 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 PDIA4P13667 645 aaKnown RBP12.16□□□□□ -0.46
VPS33A-204ENST00000540669 TAL1P17542 331 aaPredicted RBP12.16□□□□□ -0.46
VPS33A-204ENST00000540669 PDCP20941 246 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 OSBPP22059 807 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 HSD17B4P51659 736 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 SNAP25P60880 206 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 TRAF1Q13077 416 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 TKFCQ3LXA3 575 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 KRT40Q6A162 431 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 GALNT17Q6IS24 598 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 C17orf99Q6UX52 265 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 FBXO11Q86XK2 927 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 CCDC148Q8NFR7 591 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 CRYGNQ8WXF5 182 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 SPATC1LQ9H0A9 340 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 RTN4Q9NQC3 1192 aaKnown RBP12.16□□□□□ -0.46
VPS33A-204ENST00000540669 WBP1LQ9NX94 342 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 VPS54Q9P1Q0 977 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 SEC63Q9UGP8 760 aaKnown RBP12.16□□□□□ -0.46
VPS33A-204ENST00000540669 RIPK3Q9Y572 518 aa12.16□□□□□ -0.46
VPS33A-204ENST00000540669 DOCK3Q8IZD9 2030 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 MEIS2O14770 477 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 TLR2O60603 784 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 ZBED4O75132 1171 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 U2AF2P26368 475 aaKnown RBP eCLIP12.15□□□□□ -0.46
VPS33A-204ENST00000540669 ERVK-9P63128 1117 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 ERVK-24P63145 666 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 NOM1Q5C9Z4 860 aaKnown RBP12.15□□□□□ -0.46
VPS33A-204ENST00000540669 SPDYE1Q8NFV5 336 aaPredicted RBP12.15□□□□□ -0.46
VPS33A-204ENST00000540669 COA7Q96BR5 231 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 C8orf76Q96K31 380 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 AGBL1Q96MI9 1066 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 MOV10L1Q9BXT6 1211 aaKnown RBP12.15□□□□□ -0.46
VPS33A-204ENST00000540669 R3HDMLQ9H3Y0 253 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 RIC8AQ9NPQ8 531 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 PCDHA1Q9Y5I3 950 aa12.15□□□□□ -0.46
VPS33A-204ENST00000540669 KIF28PB7ZC32 967 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 NFIBO00712 420 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 STX6O43752 255 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 PEX10O60683 326 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 COPB2P35606 906 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 AKAP17AQ02040 695 aaKnown RBP12.14□□□□□ -0.47
VPS33A-204ENST00000540669 IKQ13123 557 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-204ENST00000540669 RESTQ13127 1097 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 CRHR2Q13324 411 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 MUM1L1Q5H9M0 696 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 SNRNP48Q6IEG0 339 aaKnown RBP12.14□□□□□ -0.47
VPS33A-204ENST00000540669 HEATR3Q7Z4Q2 680 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 SAMD3Q8N6K7 520 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 CCDC12Q8WUD4 166 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-204ENST00000540669 RAVER2Q9HCJ3 691 aaKnown RBP12.14□□□□□ -0.47
VPS33A-204ENST00000540669 VAT1LQ9HCJ6 419 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 CCPG1Q9ULG6 757 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 PCDHA4Q9UN74 947 aa12.14□□□□□ -0.47
VPS33A-204ENST00000540669 RPTORQ8N122 1335 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 DNAJC25-GNG10A0A024R161 153 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 EDIL3O43854 480 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 IGHA2P01877 340 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 CALML3P27482 149 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 STAT3P40763 770 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 NAPAP54920 295 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 TAF1CQ15572 869 aaPredicted RBP12.13□□□□□ -0.47
VPS33A-204ENST00000540669 Q3C1V9 767 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 LARP1BQ659C4 914 aaKnown RBP12.13□□□□□ -0.47
VPS33A-204ENST00000540669 CCDC174Q6PII3 467 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 FAM184AQ8NB25 1140 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 CHST13Q8NET6 341 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 OXER1Q8TDS5 423 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 FGD4Q96M96 766 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 GLT8D2Q9H1C3 349 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 PORCNQ9H237 461 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 FOXP1Q9H334 677 aaPredicted RBP12.13□□□□□ -0.47
VPS33A-204ENST00000540669 PRDM10Q9NQV6 1147 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 RNF146Q9NTX7 359 aa12.13□□□□□ -0.47
VPS33A-204ENST00000540669 MAP3K20Q9NYL2 800 aaKnown RBP12.13□□□□□ -0.47
VPS33A-204ENST00000540669 KCNJ14Q9UNX9 436 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms