RNA–Protein interactions for RNA: ENST00000538827.5

CD4-208, Transcript of CD4 molecule, humanhuman

TSL 1 (best)

Gene CD4, Length 985 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-208ENST00000538827 CCPG1Q9ULG6 757 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 PCDHA1Q9Y5I3 950 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 ATP6V1DQ9Y5K8 247 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 SMCO2A6NFE2 343 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 CETPP11597 493 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 DSG3P32926 999 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 PABPC4Q13310 644 aaKnown RBP eCLIP16.23■□□□□ 0.19
CD4-208ENST00000538827 NOM1Q5C9Z4 860 aaKnown RBP16.23■□□□□ 0.19
CD4-208ENST00000538827 FAM173BQ6P4H8 233 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 BLIDQ8IZY5 108 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 CPXCR1Q8N123 301 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 OXER1Q8TDS5 423 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 CHAMP1Q96JM3 812 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 GBP4Q96PP9 640 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 ZSCAN16Q9H4T2 348 aaPredicted RBP16.23■□□□□ 0.19
CD4-208ENST00000538827 RAVER2Q9HCJ3 691 aaKnown RBP16.23■□□□□ 0.19
CD4-208ENST00000538827 PCDHA4Q9UN74 947 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 SMCHD1A6NHR9 2005 aa16.23■□□□□ 0.19
CD4-208ENST00000538827 SPDYE16A6NNV3 312 aaPredicted RBP16.22■□□□□ 0.19
CD4-208ENST00000538827 BTBD18B2RXH4 712 aa16.22■□□□□ 0.19
CD4-208ENST00000538827 ZBTB48P10074 688 aaPredicted RBP16.22■□□□□ 0.19
CD4-208ENST00000538827 OSBPP22059 807 aa16.22■□□□□ 0.19
CD4-208ENST00000538827 TRAF1Q13077 416 aa16.22■□□□□ 0.19
CD4-208ENST00000538827 NR5A1Q13285 461 aa16.22■□□□□ 0.19
CD4-208ENST00000538827 COG2Q14746 738 aa16.22■□□□□ 0.19
CD4-208ENST00000538827 BRAPQ7Z569 592 aa16.22■□□□□ 0.19
CD4-208ENST00000538827 RGS22Q8NE09 1264 aa16.22■□□□□ 0.19
CD4-208ENST00000538827 RASGRP4Q8TDF6 673 aa16.22■□□□□ 0.19
CD4-208ENST00000538827 ABCB11O95342 1321 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 MYPNQ86TC9 1320 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 ESYT2A0FGR8 921 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 VWA5AO00534 786 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 GNA11P29992 359 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 MOGSQ13724 837 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 UBE2SQ16763 222 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 FAM177A1Q8N128 213 aaPredicted RBP16.21■□□□□ 0.19
CD4-208ENST00000538827 DAGLBQ8NCG7 672 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 ZNF296Q8WUU4 475 aaPredicted RBP16.21■□□□□ 0.19
CD4-208ENST00000538827 CUL5Q93034 780 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 AGBL1Q96MI9 1066 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 FOXP1Q9H334 677 aaPredicted RBP16.21■□□□□ 0.19
CD4-208ENST00000538827 SLC38A10Q9HBR0 1119 aa16.21■□□□□ 0.19
CD4-208ENST00000538827 ADAMTS3O15072 1205 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 BAG4O95429 457 aaKnown RBP16.2■□□□□ 0.18
CD4-208ENST00000538827 ICAM1P05362 532 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 FDX1P10109 184 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 ALAS1P13196 640 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 DNM1Q05193 864 aaKnown RBP16.2■□□□□ 0.18
CD4-208ENST00000538827 PLS1Q14651 629 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 NPY5RQ15761 445 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 GALNT17Q6IS24 598 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 GPAT2Q6NUI2 795 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 NOSTRINQ8IVI9 506 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 BICD2Q8TD16 824 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 BRI3BPQ8WY22 251 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 PAGR1Q9BTK6 254 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 ZMYND12Q9H0C1 365 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 ASCC2Q9H1I8 757 aaPredicted RBP16.2■□□□□ 0.18
CD4-208ENST00000538827 HOMER2Q9NSB8 354 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 PNMA3Q9UL41 463 aa16.2■□□□□ 0.18
CD4-208ENST00000538827 CCDC194A0A1B0GVG4 234 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 FAM205CA6NFA0 338 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 FIBPO43427 364 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 HOXA7P31268 230 aaPredicted RBP16.19■□□□□ 0.18
CD4-208ENST00000538827 MYSM1Q5VVJ2 828 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 JAKMIP3Q5VZ66 844 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 PIK3AP1Q6ZUJ8 805 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 REXO1Q8N1G1 1221 aaKnown RBP16.19■□□□□ 0.18
CD4-208ENST00000538827 MS4A4AQ96JQ5 239 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 ZNF396Q96N95 335 aaPredicted RBP16.19■□□□□ 0.18
CD4-208ENST00000538827 PSTPIP2Q9H939 334 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 RIC8AQ9NPQ8 531 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 TMEM260Q9NX78 707 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 HOXC10Q9NYD6 342 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 BIN2Q9UBW5 565 aaPredicted RBP16.19■□□□□ 0.18
CD4-208ENST00000538827 NOL7Q9UMY1 257 aaKnown RBP16.19■□□□□ 0.18
CD4-208ENST00000538827 CNPY2Q9Y2B0 182 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 MRPL11Q9Y3B7 192 aaKnown RBP16.19■□□□□ 0.18
CD4-208ENST00000538827 ZNF536O15090 1300 aa16.19■□□□□ 0.18
CD4-208ENST00000538827 BTBD19C9JJ37 291 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 PDHXO00330 501 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 ATP2B1P20020 1258 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 U2AF2P26368 475 aaKnown RBP eCLIP16.18■□□□□ 0.18
CD4-208ENST00000538827 MRPL12P52815 198 aaKnown RBP16.18■□□□□ 0.18
CD4-208ENST00000538827 HERVK_113P62684 666 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 KRT85P78386 507 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 CEBPZQ03701 1054 aaKnown RBP16.18■□□□□ 0.18
CD4-208ENST00000538827 SNRNP48Q6IEG0 339 aaKnown RBP16.18■□□□□ 0.18
CD4-208ENST00000538827 KRT25Q7Z3Z0 450 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 PGBD1Q96JS3 809 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 P2RX7Q99572 595 aaKnown RBP16.18■□□□□ 0.18
CD4-208ENST00000538827 PNMA2Q9UL42 364 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 PCDHA6Q9UN73 950 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 PCDHA8Q9Y5H6 950 aa16.18■□□□□ 0.18
CD4-208ENST00000538827 GOLGA6L22H0YM25 854 aa16.17■□□□□ 0.18
CD4-208ENST00000538827 TMEM132BQ14DG7 1078 aa16.17■□□□□ 0.18
CD4-208ENST00000538827 ANKRD23Q86SG2 305 aa16.17■□□□□ 0.18
CD4-208ENST00000538827 REPS2Q8NFH8 660 aa16.17■□□□□ 0.18
CD4-208ENST00000538827 SMCR8Q8TEV9 937 aaPredicted RBP16.17■□□□□ 0.18
CD4-208ENST00000538827 TNFRSF25Q93038 417 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms