RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 IL17AQ16552 155 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 CALCRLQ16602 461 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 DOK7Q18PE1 504 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 CCDC96Q2M329 555 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 SLC35G1Q2M3R5 365 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 E4F1Q66K89 784 aaPredicted RBP7.46□□□□□ -1.22
USP28-206ENST00000538224 PPP4R3AQ6IN85 833 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 KLHL10Q6JEL2 608 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 APOBEC3HQ6NTF7 200 aaKnown RBP7.46□□□□□ -1.22
USP28-206ENST00000538224 CNNM4Q6P4Q7 775 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 TMEM179Q6ZVK1 233 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 SLC51AQ86UW1 340 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 LRRC47Q8N1G4 583 aaKnown RBP7.46□□□□□ -1.22
USP28-206ENST00000538224 IGSF22Q8N9C0 903 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 TBCKQ8TEA7 893 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 NELFBQ8WX92 580 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 MKL1Q969V6 931 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 IQCDQ96DY2 449 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 ERO1AQ96HE7 468 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 DHTKD1Q96HY7 919 aaPredicted RBP7.46□□□□□ -1.22
USP28-206ENST00000538224 CDK5RAP3Q96JB5 506 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 SRRTQ9BXP5 876 aaKnown RBP7.46□□□□□ -1.22
USP28-206ENST00000538224 THAP9Q9H5L6 903 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 KANSL2Q9H9L4 492 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 DDX4Q9NQI0 724 aaKnown RBP7.46□□□□□ -1.22
USP28-206ENST00000538224 EXOC1Q9NV70 894 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 INTS13Q9NVM9 706 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 MAGEC2Q9UBF1 373 aaPredicted RBP7.46□□□□□ -1.22
USP28-206ENST00000538224 ADD3Q9UEY8 706 aaKnown RBP7.46□□□□□ -1.22
USP28-206ENST00000538224 STK24Q9Y6E0 443 aa7.46□□□□□ -1.22
USP28-206ENST00000538224 ATAD5Q96QE3 1844 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 TMEM232C9JQI7 657 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 F8W031 263 aaPredicted RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 SLU7O95391 586 aaKnown RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 FGFR1OPO95684 399 aaKnown RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 VEGFAP15692 232 aaPredicted RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 CD44P16070 742 aaKnown RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 PLCG1P19174 1290 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 RXRBP28702 533 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 PBX1P40424 430 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 ETF1P62495 437 aaKnown RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 AP3B2Q13367 1082 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 PDIA5Q14554 519 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 SEPT2Q15019 361 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 TCP11X2Q5H9J9 407 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 DACT2Q5SW24 774 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 FOXR2Q6PJQ5 311 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 MOXD1Q6UVY6 613 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 ADSSL1Q8N142 457 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 PDCL2Q8N4E4 241 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 TC2NQ8N9U0 490 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 GIMAP8Q8ND71 665 aaPredicted RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 GMCL1P1Q8NEA9 526 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 ZNF592Q92610 1267 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 MTMR8Q96EF0 704 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 C7orf25Q9BPX7 421 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 NT5C3AQ9H0P0 336 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 TMEM60Q9H2L4 133 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 SAMSN1Q9NSI8 373 aaKnown RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 TRMT1Q9NXH9 659 aaKnown RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 STK32BQ9NY57 414 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 TMOD2Q9NZR1 351 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 CGNQ9P2M7 1197 aaKnown RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 ABCB11O95342 1321 aa7.45□□□□□ -1.22
USP28-206ENST00000538224 FRMPD2Q68DX3 1309 aaPredicted RBP7.45□□□□□ -1.22
USP28-206ENST00000538224 PVALEFA0A1B0GWK0 134 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 A0A1W2PQC6 194 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 LRRC10BA6NIK2 292 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 USP27XA6NNY8 438 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 KCNJ18B7U540 433 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 N4BP3O15049 544 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 MFAP3LO75121 409 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 CCDC175P0C221 793 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 FECHP22830 423 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 CLK2P49760 499 aaKnown RBP7.44□□□□□ -1.22
USP28-206ENST00000538224 SCNN1DP51172 638 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 RBM5P52756 815 aaKnown RBP eCLIP7.44□□□□□ -1.22
USP28-206ENST00000538224 COPB1P53618 953 aaKnown RBP7.44□□□□□ -1.22
USP28-206ENST00000538224 ASIC1P78348 528 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 ICA1Q05084 483 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 KCNJ12Q14500 433 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 KRT31Q15323 416 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 CERKLQ49MI3 558 aaPredicted RBP7.44□□□□□ -1.22
USP28-206ENST00000538224 NAALADL2Q58DX5 795 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 JAKMIP3Q5VZ66 844 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 KRT79Q5XKE5 535 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 SV2BQ7L1I2 683 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 APTXQ7Z2E3 356 aaKnown RBP7.44□□□□□ -1.22
USP28-206ENST00000538224 TMTC1Q8IUR5 882 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 TMEM139Q8IV31 216 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 ADGRF4Q8IZF3 695 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 ANKRD7Q92527 254 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 GMCL1Q96IK5 515 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 TRIM47Q96LD4 638 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 MTMR9Q96QG7 549 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 TRIM9Q9C026 710 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 UBA5Q9GZZ9 404 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 VPS33BQ9H267 617 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 BLZF1Q9H2G9 400 aa7.44□□□□□ -1.22
USP28-206ENST00000538224 L2HGDHQ9H9P8 463 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms