RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 RAD21O60216 631 aa11.12□□□□□ -0.63
USP28-205ENST00000537706 ZBED4O75132 1171 aa11.12□□□□□ -0.63
USP28-205ENST00000537706 CCDC158Q5M9N0 1113 aa11.12□□□□□ -0.63
USP28-205ENST00000537706 IQSEC1Q6DN90 963 aa11.12□□□□□ -0.63
USP28-205ENST00000537706 CCDC144CPQ8IYA2 1237 aa11.12□□□□□ -0.63
USP28-205ENST00000537706 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP28-205ENST00000537706 SWAP70Q9UH65 585 aa11.12□□□□□ -0.63
USP28-205ENST00000537706 GNEQ9Y223 722 aaKnown RBP11.12□□□□□ -0.63
USP28-205ENST00000537706 MED19A0JLT2 244 aaPredicted RBP11.11□□□□□ -0.63
USP28-205ENST00000537706 MBTPS2O43462 519 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 PTPN11Q06124 597 aaPredicted RBP11.11□□□□□ -0.63
USP28-205ENST00000537706 KIAA1755Q5JYT7 1200 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 ADGRA1Q86SQ6 560 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.11□□□□□ -0.63
USP28-205ENST00000537706 VCPP55072 806 aaKnown RBP11.11□□□□□ -0.63
USP28-205ENST00000537706 GPM6BQ13491 265 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 TMED8Q6PL24 325 aaPredicted RBP11.11□□□□□ -0.63
USP28-205ENST00000537706 CHST13Q8NET6 341 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 CAGE1Q8TC20 777 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 MTG1Q9BT17 334 aaPredicted RBP11.11□□□□□ -0.63
USP28-205ENST00000537706 SNRKQ9NRH2 765 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 FBXO28Q9NVF7 368 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 CD207Q9UJ71 328 aa11.11□□□□□ -0.63
USP28-205ENST00000537706 ASTN1O14525 1302 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 MYL3P08590 195 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 CPT1AP50416 773 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 IKBKEQ14164 716 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 COL19A1Q14993 1142 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP28-205ENST00000537706 MIGA1Q8NAN2 632 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 AFAP1L1Q8TED9 768 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 SLF1Q9BQI6 1058 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 CHD9Q3L8U1 2897 aa11.1□□□□□ -0.63
USP28-205ENST00000537706 ZNFX1Q9P2E3 1918 aaKnown RBP11.09□□□□□ -0.63
USP28-205ENST00000537706 PLCD1P51178 756 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 DEFB103AP81534 67 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 CLUL1Q15846 466 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 NFRKBQ6P4R8 1299 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 REPS2Q8NFH8 660 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 CCDC17Q96LX7 622 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 CNTNAP3BQ96NU0 1288 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 C17orf80Q9BSJ5 609 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 CNTNAP3Q9BZ76 1288 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 RAD50Q92878 1312 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 USP17L12C9JPN9 530 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 USP17L21D6R901 530 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 H3BNC9 293 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 KPNA6O60684 536 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 SMPD1P17405 629 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 GABPAQ06546 454 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 PUM1Q14671 1186 aaKnown RBP eCLIP11.09□□□□□ -0.63
USP28-205ENST00000537706 EPC2Q52LR7 807 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 FAM117BQ6P1L5 589 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 CPXCR1Q8N123 301 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 KATNBL1Q9H079 304 aa11.09□□□□□ -0.63
USP28-205ENST00000537706 ATP2A1O14983 1001 aa11.08□□□□□ -0.64
USP28-205ENST00000537706 AMHP03971 560 aa11.08□□□□□ -0.64
USP28-205ENST00000537706 FAM83BQ5T0W9 1011 aa11.08□□□□□ -0.64
USP28-205ENST00000537706 TMCO2Q7Z6W1 182 aaPredicted RBP11.08□□□□□ -0.64
USP28-205ENST00000537706 MRPL50Q8N5N7 158 aaKnown RBP11.08□□□□□ -0.64
USP28-205ENST00000537706 PPP2R3CQ969Q6 453 aa11.08□□□□□ -0.64
USP28-205ENST00000537706 MCM9Q9NXL9 1143 aa11.08□□□□□ -0.64
USP28-205ENST00000537706 IDH1O75874 414 aaKnown RBP11.07□□□□□ -0.64
USP28-205ENST00000537706 SELPP16109 830 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 G3BP1Q13283 466 aaKnown RBP eCLIP11.07□□□□□ -0.64
USP28-205ENST00000537706 AMOTL1Q8IY63 956 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 PRPF38AQ8NAV1 312 aaKnown RBP11.07□□□□□ -0.64
USP28-205ENST00000537706 CRNKL1Q9BZJ0 848 aaKnown RBP11.07□□□□□ -0.64
USP28-205ENST00000537706 LMAN2LQ9H0V9 348 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 KANSL2Q9H9L4 492 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 ALG13Q9NP73 1137 aaKnown RBP11.07□□□□□ -0.64
USP28-205ENST00000537706 COG6Q9Y2V7 657 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 FOCADQ5VW36 1801 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 CYP2E1P05181 493 aaPredicted RBP11.07□□□□□ -0.64
USP28-205ENST00000537706 PURAQ00577 322 aaKnown RBP11.07□□□□□ -0.64
USP28-205ENST00000537706 KIAA1211Q6ZU35 1233 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 ZBTB33Q86T24 672 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 VTA1Q9NP79 307 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 RIPK3Q9Y572 518 aa11.07□□□□□ -0.64
USP28-205ENST00000537706 SRGAP3O43295 1099 aa11.06□□□□□ -0.64
USP28-205ENST00000537706 MKRN4PQ13434 485 aaPredicted RBP11.06□□□□□ -0.64
USP28-205ENST00000537706 LRRC8DQ7L1W4 858 aa11.06□□□□□ -0.64
USP28-205ENST00000537706 FRMD5Q7Z6J6 570 aa11.06□□□□□ -0.64
USP28-205ENST00000537706 ACAD9Q9H845 621 aa11.06□□□□□ -0.64
USP28-205ENST00000537706 EEF2P13639 858 aaKnown RBP11.05□□□□□ -0.64
USP28-205ENST00000537706 NDUFV1P49821 464 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 OAZ1P54368 228 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 CTC1Q2NKJ3 1217 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 TMEM192Q8IY95 271 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 FGD4Q96M96 766 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 YME1L1Q96TA2 773 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 RAVER2Q9HCJ3 691 aaKnown RBP11.05□□□□□ -0.64
USP28-205ENST00000537706 SALL2Q9Y467 1007 aaPredicted RBP11.05□□□□□ -0.64
USP28-205ENST00000537706 COL4A6Q14031 1691 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 CDK5RAP2Q96SN8 1893 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 LOC730098B7Z3J9 87 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 CXCL10P02778 98 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 AKR1B1P15121 316 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 LTBRP36941 435 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 ZAP70P43403 619 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms