RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 SYDE2Q5VT97 1194 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 NSMFQ6X4W1 530 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 TMEM47Q9BQJ4 181 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 RANBP17Q9H2T7 1088 aaKnown RBP16.4■□□□□ 0.22
SYNE1-235ENST00000537033 PNMA2Q9UL42 364 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 A0A0U1RQG5 324 aaPredicted RBP16.39■□□□□ 0.21
SYNE1-235ENST00000537033 SOWAHBA6NEL2 793 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 ADCY6O43306 1168 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 FPGSQ05932 587 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 MUM1L1Q5H9M0 696 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 C9orf50Q5SZB4 431 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 CCSAPQ6IQ19 270 aaPredicted RBP16.39■□□□□ 0.21
SYNE1-235ENST00000537033 RNPC3Q96LT9 517 aaKnown RBP16.39■□□□□ 0.21
SYNE1-235ENST00000537033 KATNBL1Q9H079 304 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 DIAPH3Q9NSV4 1193 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 CYP39A1Q9NYL5 469 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 FRMPD2Q68DX3 1309 aaPredicted RBP16.39■□□□□ 0.21
SYNE1-235ENST00000537033 LCTP09848 1927 aa16.39■□□□□ 0.21
SYNE1-235ENST00000537033 HIP1O00291 1037 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 SDSP20132 328 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 SLC16A2P36021 539 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 NUCB1Q02818 461 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 FAAP100Q0VG06 881 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 BTNL9Q6UXG8 535 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 ESR2Q92731 530 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 TTC14Q96N46 770 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 AP5M1Q9H0R1 490 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 GPCPD1Q9NPB8 672 aa16.38■□□□□ 0.21
SYNE1-235ENST00000537033 ADD3Q9UEY8 706 aaKnown RBP16.38■□□□□ 0.21
SYNE1-235ENST00000537033 TLR3O15455 904 aaKnown RBP16.37■□□□□ 0.21
SYNE1-235ENST00000537033 ZEB2O60315 1214 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 PDHBP11177 359 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 ITGB8P26012 769 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 NT5C2P49902 561 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 SMAD3P84022 425 aaKnown RBP16.37■□□□□ 0.21
SYNE1-235ENST00000537033 TTBK2Q6IQ55 1244 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 TLK2Q86UE8 772 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 PLEKHM2Q8IWE5 1019 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 FAM161BQ96MY7 647 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 OSBPL3Q9H4L5 887 aa16.37■□□□□ 0.21
SYNE1-235ENST00000537033 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.36■□□□□ 0.21
SYNE1-235ENST00000537033 PTPDC1A2A3K4 754 aa16.36■□□□□ 0.21
SYNE1-235ENST00000537033 ARVCFO00192 962 aa16.36■□□□□ 0.21
SYNE1-235ENST00000537033 ZNF213O14771 459 aa16.36■□□□□ 0.21
SYNE1-235ENST00000537033 CABYRO75952 493 aa16.36■□□□□ 0.21
SYNE1-235ENST00000537033 TIMP1P01033 207 aa16.36■□□□□ 0.21
SYNE1-235ENST00000537033 FSCN1Q16658 493 aaKnown RBP16.36■□□□□ 0.21
SYNE1-235ENST00000537033 CCDC178Q5BJE1 867 aa16.36■□□□□ 0.21
SYNE1-235ENST00000537033 CWC27Q6UX04 472 aaKnown RBP16.36■□□□□ 0.21
SYNE1-235ENST00000537033 TBC1D10CQ8IV04 446 aa16.36■□□□□ 0.21
SYNE1-235ENST00000537033 MPHOSPH6Q99547 160 aaKnown RBP16.36■□□□□ 0.21
SYNE1-235ENST00000537033 VTA1Q9NP79 307 aa16.36■□□□□ 0.21
SYNE1-235ENST00000537033 LOC102724159A0A0B4J2E5 919 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 NKX3-2P78367 333 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 IRX5P78411 483 aaPredicted RBP16.35■□□□□ 0.21
SYNE1-235ENST00000537033 BEX3Q00994 111 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 ZNF543Q08ER8 600 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 PWP2Q15269 919 aaKnown RBP16.35■□□□□ 0.21
SYNE1-235ENST00000537033 IQSEC1Q6DN90 963 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 EEPD1Q7L9B9 569 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 IQCA1Q86XH1 822 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 FBXO16Q8IX29 292 aaPredicted RBP16.35■□□□□ 0.21
SYNE1-235ENST00000537033 EXOC6Q8TAG9 804 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 TBX21Q9UL17 535 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 GNEQ9Y223 722 aaKnown RBP16.35■□□□□ 0.21
SYNE1-235ENST00000537033 NEDD4P46934 1319 aa16.35■□□□□ 0.21
SYNE1-235ENST00000537033 NFIBO00712 420 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 CTAGE5O15320 804 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 IGHDP01880 384 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 SMPD1P17405 629 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 CDK7P50613 346 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 PPIGQ13427 754 aaKnown RBP eCLIP16.34■□□□□ 0.21
SYNE1-235ENST00000537033 BAATQ14032 418 aaPredicted RBP16.34■□□□□ 0.21
SYNE1-235ENST00000537033 GPATCH4Q5T3I0 446 aaKnown RBP16.34■□□□□ 0.21
SYNE1-235ENST00000537033 MFSD5Q6N075 450 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 CXCL17Q6UXB2 119 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 GUCD1Q96NT3 240 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 Q9Y3F1 56 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 ASTN1O14525 1302 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 COL6A3P12111 3177 aa16.34■□□□□ 0.21
SYNE1-235ENST00000537033 DYNC1LI2O43237 492 aaPredicted RBP16.33■□□□□ 0.2
SYNE1-235ENST00000537033 SNHG28P0DPA3 235 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 CALML3P27482 149 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 ALDH5A1P51649 535 aaPredicted RBP16.33■□□□□ 0.2
SYNE1-235ENST00000537033 EPHB4P54760 987 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 IMMTQ16891 758 aaKnown RBP16.33■□□□□ 0.2
SYNE1-235ENST00000537033 RNF207Q6ZRF8 634 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 KIAA1211Q6ZU35 1233 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 DGKHQ86XP1 1220 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 FAM126BQ8IXS8 530 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 TMEM199Q8N511 208 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 MORC4Q8TE76 937 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 ZKSCAN3Q9BRR0 538 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 SEZ6LQ9BYH1 1024 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 KAT14Q9H8E8 782 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 PDGFCQ9NRA1 345 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 CTNNA3Q9UI47 895 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 DDX49Q9Y6V7 483 aaKnown RBP16.33■□□□□ 0.2
SYNE1-235ENST00000537033 WDR19Q8NEZ3 1342 aa16.33■□□□□ 0.2
SYNE1-235ENST00000537033 B4DLN1 442 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms