RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 THNSL2Q86YJ6 484 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 TMEM151AQ8N4L1 468 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 USHBP1Q8N6Y0 703 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 DCAF4Q8WV16 495 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 COPS5Q92905 334 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 MAGEB10Q96LZ2 347 aaPredicted RBP7.56□□□□□ -1.2
PRKDC-208ENST00000536710 TARS2Q9BW92 718 aaKnown RBP7.56□□□□□ -1.2
PRKDC-208ENST00000536710 CDADC1Q9BWV3 514 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 CAAP1Q9H8G2 361 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 TRIM39Q9HCM9 518 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 CLEC1BQ9P126 229 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 PLAGL2Q9UPG8 496 aa7.56□□□□□ -1.2
PRKDC-208ENST00000536710 A0A087X0B3 334 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 AQP7O14520 342 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 H2AFB1P0C5Y9 115 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 H2AFB2P0C5Z0 115 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 PLS3P13797 630 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 STAT3P40763 770 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 NEK4P51957 841 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 CYP4F3Q08477 520 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 CPSF6Q16630 551 aaKnown RBP eCLIP7.55□□□□□ -1.2
PRKDC-208ENST00000536710 IFI16Q16666 785 aaKnown RBP7.55□□□□□ -1.2
PRKDC-208ENST00000536710 DENND5AQ6IQ26 1287 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 KCNT2Q6UVM3 1135 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 FGD2Q7Z6J4 655 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 THAP5Q7Z6K1 395 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 CREG2Q8IUH2 290 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 NAT16Q8N8M0 369 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 LINC00116Q8NCU8 138 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 KREMEN2Q8NCW0 462 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 NETO1Q8TDF5 533 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 FRS2Q8WU20 508 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 PHF20Q9BVI0 1012 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 INTS7Q9NVH2 962 aaKnown RBP7.55□□□□□ -1.2
PRKDC-208ENST00000536710 PIM2Q9P1W9 311 aa7.55□□□□□ -1.2
PRKDC-208ENST00000536710 TNPO3Q9Y5L0 923 aaKnown RBP7.55□□□□□ -1.2
PRKDC-208ENST00000536710 TMEM265A0A087WTH1 108 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.54□□□□□ -1.2
PRKDC-208ENST00000536710 DNAJC8O75937 253 aaPredicted RBP7.54□□□□□ -1.2
PRKDC-208ENST00000536710 ZNF205O95201 554 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 RASGRP1O95267 797 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 ITGB2P05107 769 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 EEF1DP3Q658K8 133 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 STYK1Q6J9G0 422 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 MTDHQ86UE4 582 aaKnown RBP7.54□□□□□ -1.2
PRKDC-208ENST00000536710 GSTCDQ8NEC7 633 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 NPLOC4Q8TAT6 608 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 AP5S1Q9NUS5 200 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 PCDHA11Q9Y5I1 949 aa7.54□□□□□ -1.2
PRKDC-208ENST00000536710 ASXL2Q76L83 1435 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 KCNQ2O43526 872 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 CRTAMO95727 393 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 PAMP19021 973 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 RPL10P27635 214 aaKnown RBP7.53□□□□□ -1.2
PRKDC-208ENST00000536710 GUCY1A3Q02108 690 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 ZNF460Q14592 562 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 RTP2Q5QGT7 225 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 RCSD1Q6JBY9 416 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 RNF111Q6ZNA4 994 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 LEO1Q8WVC0 666 aaPredicted RBP7.53□□□□□ -1.2
PRKDC-208ENST00000536710 ATP13A1Q9HD20 1204 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 ZC3H7BQ9UGR2 993 aaKnown RBP7.53□□□□□ -1.2
PRKDC-208ENST00000536710 TMEFF2Q9UIK5 374 aaPredicted RBP7.53□□□□□ -1.2
PRKDC-208ENST00000536710 MAPRE3Q9UPY8 281 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 PCDHA9Q9Y5H5 950 aa7.53□□□□□ -1.2
PRKDC-208ENST00000536710 NPHP3-ACAD11A0A0J9YXS1 232 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 GSG1L2A8MUP6 293 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 RAB11FIP3O75154 756 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 ASLP04424 464 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 IGFALSP35858 605 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 FLT3P36888 993 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 LTBRP36941 435 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 GSK3AP49840 483 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 NFKB2Q00653 900 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 EGR3Q06889 387 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 GAB4Q2WGN9 574 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 ACBD5Q5T8D3 534 aaPredicted RBP7.52□□□□□ -1.21
PRKDC-208ENST00000536710 TMPRSS7Q7RTY8 843 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 RNF180Q86T96 592 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 ZDHHC13Q8IUH4 622 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 PPM1KQ8N3J5 372 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 DDX1Q92499 740 aaKnown RBP7.52□□□□□ -1.21
PRKDC-208ENST00000536710 DIO2Q92813 273 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 SCLYQ96I15 445 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 HRASLS5Q96KN8 279 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 SEMA3GQ9NS98 782 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 PCDHA8Q9Y5H6 950 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 SNX11Q9Y5W9 270 aa7.52□□□□□ -1.21
PRKDC-208ENST00000536710 KPNA6O60684 536 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 JMJD7P0C870 316 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 FOSL1P15407 271 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 NAT1P18440 290 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 ENDOUP21128 410 aaKnown RBP7.51□□□□□ -1.21
PRKDC-208ENST00000536710 KCNAB2Q13303 367 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 LAPTM5Q13571 262 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 E4F1Q66K89 784 aaPredicted RBP7.51□□□□□ -1.21
PRKDC-208ENST00000536710 IQCEQ6IPM2 695 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 ZPBP2Q6X784 338 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 WAPLQ7Z5K2 1190 aa7.51□□□□□ -1.21
PRKDC-208ENST00000536710 IFNL3Q8IZI9 196 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 140.7 ms