RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CCDC47Q96A33 483 aaKnown RBP14.77□□□□□ -0.05
LDLR-203ENST00000535915 UBA5Q9GZZ9 404 aa14.77□□□□□ -0.05
LDLR-203ENST00000535915 CUEDC2Q9H467 287 aa14.77□□□□□ -0.05
LDLR-203ENST00000535915 THAP9Q9H5L6 903 aa14.77□□□□□ -0.05
LDLR-203ENST00000535915 ZRANB2O95218 330 aaKnown RBP eCLIP14.76□□□□□ -0.05
LDLR-203ENST00000535915 ADRA2BP18089 450 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 TECP42680 631 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 MB21D1Q8N884 522 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 TBCKQ8TEA7 893 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 ZSWIM4Q9H7M6 989 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 MAGEF1Q9HAY2 307 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 BIN2Q9UBW5 565 aaPredicted RBP14.76□□□□□ -0.05
LDLR-203ENST00000535915 POLLQ9UGP5 575 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 USP17L5A8MUK1 530 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 LGALS16A8MUM7 142 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 UBAP1LF5GYI3 381 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 C6orf229H3BNL8 230 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 PDE4DQ08499 809 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 SEMA3FQ13275 785 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 KIF4BQ2VIQ3 1234 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 JAKMIP3Q5VZ66 844 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 REXO1Q8N1G1 1221 aaKnown RBP14.76□□□□□ -0.05
LDLR-203ENST00000535915 TBC1D16Q8TBP0 767 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 TBC1D22AQ8WUA7 517 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 SLF1Q9BQI6 1058 aa14.76□□□□□ -0.05
LDLR-203ENST00000535915 TTC26A0AVF1 554 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 CTAGE9A4FU28 777 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 SEC31AO94979 1220 aaKnown RBP14.75□□□□□ -0.05
LDLR-203ENST00000535915 GYS1P13807 737 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 SLC35F6Q8N357 371 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 RABGGTAQ92696 567 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 FAM163AQ96GL9 167 aaPredicted RBP14.75□□□□□ -0.05
LDLR-203ENST00000535915 ST7Q9NRC1 585 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 EXOC1Q9NV70 894 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 FRMPD2Q68DX3 1309 aaPredicted RBP14.75□□□□□ -0.05
LDLR-203ENST00000535915 BBOX1O75936 387 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 ABL1P00519 1130 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 SMARCA1P28370 1054 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 ASIC1P78348 528 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 PICALMQ13492 652 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 TTI2Q6NXR4 508 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 CSGALNACT2Q8N6G5 542 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 IPO4Q8TEX9 1081 aaKnown RBP14.75□□□□□ -0.05
LDLR-203ENST00000535915 DHTKD1Q96HY7 919 aaPredicted RBP14.75□□□□□ -0.05
LDLR-203ENST00000535915 CHP1Q99653 195 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 TRIM9Q9C026 710 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 CDC23Q9UJX2 597 aa14.75□□□□□ -0.05
LDLR-203ENST00000535915 GAKO14976 1311 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 SRGAP1Q7Z6B7 1085 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 EEF2KMTQ96G04 330 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 TMEM260Q9NX78 707 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 PUF60Q9UHX1 559 aaKnown RBP14.74□□□□□ -0.05
LDLR-203ENST00000535915 LUC7L2Q9Y383 392 aaKnown RBP14.74□□□□□ -0.05
LDLR-203ENST00000535915 A0A1W2PQC6 194 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 TXKP42681 527 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 CHMP4BP1P59074 171 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 POTEDQ86YR6 584 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 OR8K1Q8NGG5 319 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 ZNF507Q8TCN5 953 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 NOC3LQ8WTT2 800 aaKnown RBP14.74□□□□□ -0.05
LDLR-203ENST00000535915 CALML4Q96GE6 196 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 PARD6BQ9BYG5 372 aa14.74□□□□□ -0.05
LDLR-203ENST00000535915 PDHBP11177 359 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 DNM2P50570 870 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 GTF2IP78347 998 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 AMPD3Q01432 767 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 TSR1Q2NL82 804 aaKnown RBP14.73□□□□□ -0.05
LDLR-203ENST00000535915 P2RX5Q93086 422 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 TUBGCP2Q9BSJ2 902 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 DAGLAQ9Y4D2 1042 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 EPN1Q9Y6I3 576 aaPredicted RBP14.73□□□□□ -0.05
LDLR-203ENST00000535915 BICDL2A1A5D9 508 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 B4DLN1 442 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 NDUFA10O95299 355 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 STK4Q13043 487 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 TERF2Q15554 542 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 CC2D1AQ6P1N0 951 aaPredicted RBP14.73□□□□□ -0.05
LDLR-203ENST00000535915 LRRC47Q8N1G4 583 aaKnown RBP14.73□□□□□ -0.05
LDLR-203ENST00000535915 CEP112Q8N8E3 955 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 GJD4Q96KN9 370 aaPredicted RBP14.73□□□□□ -0.05
LDLR-203ENST00000535915 DUSP9Q99956 384 aaKnown RBP14.73□□□□□ -0.05
LDLR-203ENST00000535915 C7orf25Q9BPX7 421 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 RIOX1Q9H6W3 641 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 CCNE1P24864 410 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 ARHGAP25P42331 645 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 PLA2G4AP47712 749 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 EIF6P56537 245 aaKnown RBP14.73□□□□□ -0.05
LDLR-203ENST00000535915 COA7Q96BR5 231 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 NAPGQ99747 312 aaPredicted RBP14.73□□□□□ -0.05
LDLR-203ENST00000535915 CAPN11Q9UMQ6 739 aa14.73□□□□□ -0.05
LDLR-203ENST00000535915 ESYT2A0FGR8 921 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 F8W031 263 aaPredicted RBP14.72□□□□□ -0.05
LDLR-203ENST00000535915 RIMBP2O15034 1052 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 FCER1AP12319 257 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 NOVP48745 357 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 TUBB2AQ13885 445 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 ANKRD40Q6AI12 368 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 DNAJC7Q99615 494 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 MMTAG2Q9BU76 263 aaKnown RBP14.72□□□□□ -0.05
LDLR-203ENST00000535915 TUBB2BQ9BVA1 445 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms